Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NHF51_RS18120 Genome accession   NZ_CP099717
Coordinates   3959757..3960998 (+) Length   413 a.a.
NCBI ID   WP_252995131.1    Uniprot ID   A0AAE9MH67
Organism   Aeromonas encheleia strain SOD01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3954757..3965998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHF51_RS18095 (NHF51_18095) ampD 3955165..3955737 (-) 573 WP_252995127.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NHF51_RS18100 (NHF51_18100) - 3955872..3956342 (+) 471 WP_042653204.1 TIGR02281 family clan AA aspartic protease -
  NHF51_RS18105 (NHF51_18105) nadC 3956346..3957203 (+) 858 WP_252995128.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NHF51_RS18110 (NHF51_18110) - 3957524..3957916 (+) 393 WP_252995129.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NHF51_RS18115 (NHF51_18115) pilB 3957920..3959626 (+) 1707 WP_252995130.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  NHF51_RS18120 (NHF51_18120) pilC 3959757..3960998 (+) 1242 WP_252995131.1 type II secretion system F family protein Machinery gene
  NHF51_RS18125 (NHF51_18125) pilD 3961103..3961975 (+) 873 WP_252995132.1 A24 family peptidase Machinery gene
  NHF51_RS18130 (NHF51_18130) coaE 3961994..3962608 (+) 615 WP_252995133.1 dephospho-CoA kinase -
  NHF51_RS18135 (NHF51_18135) zapD 3962646..3963368 (+) 723 WP_218329451.1 cell division protein ZapD -
  NHF51_RS18140 (NHF51_18140) yacG 3963385..3963579 (+) 195 WP_042653212.1 DNA gyrase inhibitor YacG -
  NHF51_RS18145 (NHF51_18145) mutT 3963636..3964043 (-) 408 WP_252995134.1 8-oxo-dGTP diphosphatase MutT -
  NHF51_RS18150 (NHF51_18150) - 3964052..3965236 (-) 1185 WP_252995135.1 M48 family metallopeptidase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45563.68 Da        Isoelectric Point: 9.9047

>NTDB_id=701303 NHF51_RS18120 WP_252995131.1 3959757..3960998(+) (pilC) [Aeromonas encheleia strain SOD01]
MATLAQKQNTPKKVFSFRWHGVNRKGQKVSGELQADSINTVKNELRKQGVNVTRINKQSQGLFSKGGAKIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPMSEALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
AIYREKSEALKSKIKKAMLYPTMVILVAIIVTSILLLFVIPQFEEIFKSFGAELPIFTQFVIGISRFMQHWWYAIFGGIA
LAIFLYVRAWRSSQKVRDNTDRFILTIPIVGSILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAIMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAVIFEQEVDDMVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=701303 NHF51_RS18120 WP_252995131.1 3959757..3960998(+) (pilC) [Aeromonas encheleia strain SOD01]
ATGGCAACATTAGCGCAAAAACAGAACACCCCGAAAAAGGTCTTCTCCTTCCGCTGGCACGGGGTCAACCGCAAGGGCCA
GAAGGTCTCTGGCGAGTTGCAGGCCGACAGCATCAACACCGTCAAGAACGAGTTGCGCAAGCAGGGCGTCAACGTCACCA
GGATCAACAAGCAGAGCCAGGGGCTGTTTTCCAAGGGTGGCGCCAAGATCAAACCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGCGTGCCGCTGGTACAGAGCCTGCAGATCATCGCGCGCGGCCACGAAAAAGCGGC
GGTACGCGAGCTGATCGGCCAGATCGCCGCCGATGTGGAAACCGGTACCCCCATGTCAGAGGCCCTGCGTCGCCATCCTC
GCCACTTCGATGCGCTCTACTGCGACCTGGTAGAAGCGGGGGAGCAATCCGGCGCGCTGGAAACCATCTACGACCGGATC
GCCATCTACCGCGAGAAGAGCGAGGCGCTCAAGTCCAAGATCAAGAAGGCGATGCTCTACCCGACCATGGTCATCCTGGT
GGCCATCATAGTGACCTCCATCCTACTGCTGTTCGTCATTCCCCAGTTCGAGGAGATCTTCAAGAGCTTCGGCGCCGAAC
TGCCCATCTTCACCCAGTTCGTCATCGGTATCTCCCGCTTCATGCAACACTGGTGGTATGCGATCTTTGGCGGCATCGCC
CTCGCCATCTTCCTCTACGTGCGCGCCTGGCGCAGCTCCCAGAAGGTGCGCGACAACACGGACAGGTTCATCCTCACCAT
CCCCATAGTGGGCTCGATCTTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCCGCCGGTA
TCCCGCTGGTTGACGCCCTGGTCTCGGCCGCCGGCGCCTCCGGCAACTATGTCTACCGCACCGCCATCATGGCCATCCGC
AACGAGGTCGTGGCCGGCATGCAGATCAACGTCGCCATGCGTACCGTGGACCTGTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGGGAGGAGTCCGGCGCCATCGATGACATGCTCTCCAAGGTGGCGGTCATCTTCGAGCAGGAAGTGGACGACA
TGGTCGATGGCCTAACCAGCCTGCTCGAACCCCTCATCATGGTGGTACTGGGGGTGCTGGTCGGTGGCATGGTCGTCGCC
ATGTACCTGCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.808

95.884

0.535
  pilC Acinetobacter baumannii D1279779

53.367

97.094

0.518
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.42

98.547

0.467
  pilC Vibrio campbellii strain DS40M4

46.482

96.368

0.448
  pilG Neisseria gonorrhoeae MS11

40.988

98.063

0.402
  pilG Neisseria meningitidis 44/76-A

40.741

98.063

0.4
  pilC Thermus thermophilus HB27

38

96.852

0.368