Detailed information NTG0701304

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NHF51_RS18125
• Genome accession: NZ_CP099717
• Coordinates: 3961103..3961975 (+)
• Length: 290 a.a.
• NCBI ID: WP_252995132.1
• Uniprot ID: A0AAE9MF92
• Organism: Aeromonas encheleia strain SOD01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3956103..3966975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NHF51_RS18105 (NHF51_18105)	nadC	3956346..3957203 (+)	858	WP_252995128.1	carboxylating nicotinate-nucleotide diphosphorylase	-
NHF51_RS18110 (NHF51_18110)	-	3957524..3957916 (+)	393	WP_252995129.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
NHF51_RS18115 (NHF51_18115)	pilB	3957920..3959626 (+)	1707	WP_252995130.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
NHF51_RS18120 (NHF51_18120)	pilC	3959757..3960998 (+)	1242	WP_252995131.1	type II secretion system F family protein	Machinery gene
NHF51_RS18125 (NHF51_18125)	pilD	3961103..3961975 (+)	873	WP_252995132.1	A24 family peptidase	Machinery gene
NHF51_RS18130 (NHF51_18130)	coaE	3961994..3962608 (+)	615	WP_252995133.1	dephospho-CoA kinase	-
NHF51_RS18135 (NHF51_18135)	zapD	3962646..3963368 (+)	723	WP_218329451.1	cell division protein ZapD	-
NHF51_RS18140 (NHF51_18140)	yacG	3963385..3963579 (+)	195	WP_042653212.1	DNA gyrase inhibitor YacG	-
NHF51_RS18145 (NHF51_18145)	mutT	3963636..3964043 (-)	408	WP_252995134.1	8-oxo-dGTP diphosphatase MutT	-
NHF51_RS18150 (NHF51_18150)	-	3964052..3965236 (-)	1185	WP_252995135.1	M48 family metallopeptidase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32057.24 Da
• Isoelectric Point: 6.8230

>NTDB_id=701304 NHF51_RS18125 WP_252995132.1 3961103..3961975(+) (pilD) [Aeromonas encheleia strain SOD01]
MASLIELAHGLPWLYLSLMFLFSLMIGSFLNVVIHRLPIMLEREWHAEYRSYFDSDADPAPTTPYNLMVPRSCCPHCDHP
IGALENIPLLSWLWLKGRCRECRAPISARYPLVELLTALLSVAVAATLAPGWGTLAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLLGGFVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAAIGAWLGWQALPIVLLLSSL
IGALIGLTLIALRRHHQANPIPFGPYLAIAGWIALLWGDSITRWYLNTVL

Nucleotide

• Length: 873 bp

>NTDB_id=701304 NHF51_RS18125 WP_252995132.1 3961103..3961975(+) (pilD) [Aeromonas encheleia strain SOD01]
ATGGCGTCTCTGATCGAACTGGCCCACGGCCTGCCCTGGCTCTACCTCTCCCTGATGTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCACGCGGAATACCGCAGCTACTTCG
ACAGCGATGCCGACCCCGCCCCCACCACGCCTTACAACCTGATGGTACCGCGCTCCTGCTGCCCTCACTGCGACCATCCC
ATCGGGGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGAGAGTGTCGGGCCCCCATCTC
GGCCCGTTATCCGCTGGTCGAATTGCTGACCGCCCTGCTGTCGGTGGCCGTCGCGGCGACCCTGGCCCCGGGCTGGGGCA
CCCTGGCCGCTCTGGCGCTGACCTGGGTGCTGGTCGCGCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCAGACCAG
CTCACCCTGCCACTGCTGTGGGGAGGCCTGCTGTTCAACCTGCTGGGCGGCTTCGTCCCGCTGGGAGATGCGGTGATCGG
GGCTATGGCCGGGTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAACTGCTCACCGGCAAGGAGGGAATGGGCTACG
GCGACTTCAAACTGCTGGCCGCCATCGGCGCCTGGCTGGGCTGGCAGGCTCTGCCCATAGTGCTGCTGCTCTCCTCCCTG
ATCGGTGCCCTGATCGGCCTCACGCTGATCGCCCTGCGCCGGCATCATCAAGCCAACCCTATTCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATCGCGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTAAACACCGTCCTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.298	98.276	0.583
pilD	Vibrio campbellii strain DS40M4	53.659	98.966	0.531
pilD	Acinetobacter nosocomialis M2	50.719	95.862	0.486
pilD	Acinetobacter baumannii D1279779	50.36	95.862	0.483
pilD	Neisseria gonorrhoeae MS11	50.19	90.69	0.455