NTDB

Overview

Name	ssbB/cilA	Type	Machinery gene
Locus tag	NEE09_RS01945	Genome accession	NZ_CP099641
Coordinates	366698..367093 (+)	Length	131 a.a.
NCBI ID	WP_000282443.1	Uniprot ID	A0A0E8PDH7
Organism	Streptococcus pneumoniae strain ATCC 700671
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 361698..372093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NEE09_RS01895	-	361823..362185 (+)	363	WP_000078805.1	DUF2200 domain-containing protein	-
NEE09_RS01900	-	362182..362685 (+)	504	WP_000800942.1	phosphatase PAP2 family protein	-
NEE09_RS01905	-	362799..363245 (+)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
NEE09_RS01910	-	363251..363925 (+)	675	WP_000725750.1	membrane protein	-
NEE09_RS01915	-	364086..364277 (+)	192	WP_000291826.1	cell wall-binding protein	-
NEE09_RS01920	-	364284..364364 (+)	81	WP_223842529.1	hypothetical protein	-
NEE09_RS01925	-	364562..364861 (+)	300	WP_001013974.1	DUF4651 domain-containing protein	-
NEE09_RS01930	-	364858..365175 (+)	318	WP_000615769.1	thioredoxin family protein	-
NEE09_RS01935	ytpR	365191..365817 (+)	627	WP_000578289.1	YtpR family tRNA-binding protein	-
NEE09_RS01940	-	365859..366620 (+)	762	WP_001107758.1	SDR family NAD(P)-dependent oxidoreductase	-
NEE09_RS01945	ssbB/cilA	366698..367093 (+)	396	WP_000282443.1	single-stranded DNA-binding protein	Machinery gene
NEE09_RS01950	groES	367249..367533 (+)	285	WP_000917299.1	co-chaperone GroES	-
NEE09_RS01955	groL	367549..369171 (+)	1623	WP_000031573.1	chaperonin GroEL	-
NEE09_RS01960	-	369270..370576 (-)	1307	Protein_354	transposase	-
NEE09_RS01965	-	370737..370943 (+)	207	WP_000775827.1	transcriptional regulator	-
NEE09_RS01970	-	371298..371831 (-)	534	WP_000775321.1	DUF402 domain-containing protein	-

Sequence

Protein

Download Length: 131 a.a. Molecular weight: 14935.91 Da Isoelectric Point: 5.9409

                                >NTDB_id=701187 NEE09_RS01945 WP_000282443.1 366698..367093(+) (ssbB/cilA) [Streptococcus pneumoniae strain ATCC 700671]

MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREVDFVNMVLWGRLAETLASYATKGSLISVDGELRTR

RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

Download Length: 396 bp

                                >NTDB_id=701187 NEE09_RS01945 WP_000282443.1 366698..367093(+) (ssbB/cilA) [Streptococcus pneumoniae strain ATCC 700671]

ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC

GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGTTGATTTTGTCAATATGGTCCTAT

GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT

CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA

ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0E8PDH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae Rx1	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae D39	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae R6	98.473	100	0.985
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	96.947	100	0.969
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405

Detailed information NTG0701187