Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SA58113_RS04320 Genome accession   NZ_AP018562
Coordinates   875606..876034 (+) Length   142 a.a.
NCBI ID   WP_072519131.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain 58113     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 870606..881034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA58113_RS04250 (SA58113_0817) - 870763..871221 (-) 459 WP_070854173.1 ImmA/IrrE family metallo-endopeptidase -
  SA58113_RS04255 (SA58113_0818) - 871233..871565 (-) 333 WP_001260004.1 helix-turn-helix domain-containing protein -
  SA58113_RS04260 (SA58113_0819) - 871758..871997 (+) 240 WP_126495133.1 helix-turn-helix domain-containing protein -
  SA58113_RS04265 (SA58113_0820) - 872012..872191 (+) 180 WP_000393082.1 hypothetical protein -
  SA58113_RS04270 (SA58113_0821) - 872181..872420 (-) 240 WP_000438628.1 hypothetical protein -
  SA58113_RS04275 (SA58113_0822) - 872477..873229 (+) 753 WP_061736566.1 phage antirepressor KilAC domain-containing protein -
  SA58113_RS04280 - 873245..873448 (+) 204 Protein_808 hypothetical protein -
  SA58113_RS04285 (SA58113_0823) - 873416..873661 (-) 246 WP_000122246.1 hypothetical protein -
  SA58113_RS04290 (SA58113_0824) - 873732..873953 (+) 222 WP_000977378.1 hypothetical protein -
  SA58113_RS04295 - 873946..874116 (+) 171 WP_076691103.1 DUF1270 domain-containing protein -
  SA58113_RS04300 (SA58113_0826) - 874121..874435 (+) 315 WP_126495135.1 helix-turn-helix transcriptional regulator -
  SA58113_RS04305 (SA58113_0827) - 874499..874759 (+) 261 WP_031811449.1 DUF1108 family protein -
  SA58113_RS04310 (SA58113_0828) - 874769..874990 (+) 222 WP_000815401.1 DUF2483 family protein -
  SA58113_RS04315 (SA58113_0829) - 874983..875606 (+) 624 WP_126495136.1 DUF1071 domain-containing protein -
  SA58113_RS04320 (SA58113_0830) ssbA 875606..876034 (+) 429 WP_072519131.1 single-stranded DNA-binding protein Machinery gene
  SA58113_RS04325 (SA58113_0831) - 876048..876722 (+) 675 WP_126495137.1 putative HNHc nuclease -
  SA58113_RS04330 (SA58113_0832) - 876828..877685 (-) 858 WP_000371250.1 DUF4393 domain-containing protein -
  SA58113_RS04335 (SA58113_0833) - 877749..878534 (+) 786 WP_126495138.1 conserved phage C-terminal domain-containing protein -
  SA58113_RS04340 (SA58113_0834) - 878547..879332 (+) 786 WP_000443352.1 ATP-binding protein -
  SA58113_RS04345 (SA58113_0835) - 879329..879487 (+) 159 WP_000628833.1 hypothetical protein -
  SA58113_RS04350 (SA58113_0836) - 879500..879721 (+) 222 WP_001123688.1 DUF3269 family protein -
  SA58113_RS04355 (SA58113_0837) - 879731..880138 (+) 408 WP_126495139.1 RusA family crossover junction endodeoxyribonuclease -
  SA58113_RS04360 (SA58113_0838) - 880138..880323 (+) 186 WP_126495140.1 DUF3113 family protein -
  SA58113_RS04365 (SA58113_0839) - 880324..880686 (+) 363 WP_126495141.1 SA1788 family PVL leukocidin-associated protein -
  SA58113_RS04370 - 880687..880935 (+) 249 WP_001126839.1 phi PVL orf 51-like protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15998.65 Da        Isoelectric Point: 8.4586

>NTDB_id=70081 SA58113_RS04320 WP_072519131.1 875606..876034(+) (ssbA) [Staphylococcus argenteus strain 58113]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKEGRRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=70081 SA58113_RS04320 WP_072519131.1 875606..876034(+) (ssbA) [Staphylococcus argenteus strain 58113]
ATGTTAAACAGAACAGTATTAGTAGGGCGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACAAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAACGTAGTAGTAT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCACTGGCAGGTGTAGACGGGCGATTACAAACACGC
AGTTACGATAACAAAGAAGGGCGACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACCTCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.697
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.62
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

74.648

0.444
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.259

100

0.415
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae Rx1

38.732

100

0.387
  ssbB/cilA Streptococcus pneumoniae D39

38.732

100

0.387
  ssbB/cilA Streptococcus pneumoniae R6

38.732

100

0.387
  ssbB/cilA Streptococcus mitis SK321

38.732

100

0.387

Multiple sequence alignment