Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NGM19_RS14520 Genome accession   NZ_CP099548
Coordinates   3038900..3041032 (-) Length   710 a.a.
NCBI ID   WP_252666000.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ6079     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3033900..3046032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS14505 (NGM19_14505) - 3036322..3037200 (-) 879 WP_151690684.1 hypothetical protein -
  NGM19_RS14510 (NGM19_14510) aroB 3037217..3038299 (-) 1083 WP_042891731.1 3-dehydroquinate synthase -
  NGM19_RS14515 (NGM19_14515) aroK 3038320..3038880 (-) 561 WP_004909618.1 shikimate kinase AroK -
  NGM19_RS14520 (NGM19_14520) pilQ 3038900..3041032 (-) 2133 WP_252666000.1 type IV pilus secretin PilQ family protein Machinery gene
  NGM19_RS14525 (NGM19_14525) pilP 3041094..3041621 (-) 528 WP_252665716.1 pilus assembly protein PilP Machinery gene
  NGM19_RS14530 (NGM19_14530) pilO 3041621..3042361 (-) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  NGM19_RS14535 (NGM19_14535) pilN 3042358..3043002 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  NGM19_RS14540 (NGM19_14540) pilM 3043002..3044060 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 76877.16 Da        Isoelectric Point: 5.9954

>NTDB_id=700620 NGM19_RS14520 WP_252666000.1 3038900..3041032(-) (pilQ) [Acinetobacter junii strain AJ6079]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSINVAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPALITNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPNKAKPQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVAELIKAEEDEAKAIAQSVKLSPLQTEYIQLSYAKAADIEKLITQGKNGSGNSNQGGGGSLGDSVG
SLLSPRGTVSIDPRTNTLIVNDTSQKIDQIRKMIDLLDVSVKQVMIEARIVRASTDFTKEMGVKWGILSQGITSNNDLLV
GGSDTTLWNLRDPEKDTDTGGWKYEIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVL
TADKQAAKIESGTQIPYSSSTGGGANAVPKTEFINATLSLDVTPSITPEGKVMMKLNITKDSPGNPTPTGQLTINKNTID
TNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPYVGKLFRRESKQDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=700620 NGM19_RS14520 WP_252666000.1 3038900..3041032(-) (pilQ) [Acinetobacter junii strain AJ6079]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGTGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACATCTATT
CCTGTTTCAACCAATGAGGCAAGTTCCATCAATGTAGCTGCAGATGATCAGCGTGCTCGTTTAATCGTGAATTTAAAAGA
CTCGGGTGCTTTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCAGCAAAACCAGCTTTAATCACTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGGGTTTCCAATATTGGTTTTCAACGAGGAAATCAAGGTGAAGGACTA
GTTGTTATCGATTTATTGGGGGGTAATACACCAGTAGATGTACAACAACAAGGAAGTAAAATTGTTGTTCGTACTCTTGG
AAATAAAATCCCAACGCACTTGGCGCGTCGTTTAAATACTAATGATTTTGCGACCCCAGTAGCAAGTATTGATGCTTATA
ACGACAAAGGAAATGGGGTTATTACTATTCAATCTGCGGGTAGCTATGAGTACATGGCTTATCAGGCAGAGAACAAACTT
ACAATTAGTTTAAAAAGACCAGAAGATAAATCACCGAATAAAGCTAAGCCACAAACTTATACTGGAAATAAGATTTCATT
GGATTTCCAAGACATCGAGGTTCGCCGTGTTTTGCAGTTGTTAGCAGACTTTACCGGAATTAATATGGTTGCTGCTGATA
CTGTACAGGGAAATATTACACTACGTCTTAAAGACGTTCCTTGGGATCAGGCTCTTGATATCGTTTTAAAAACAAAAAAT
TTGGATAAACGTCGTAATGGAAATGTAATTTGGATTGCACCAGTTGCTGAGCTGATTAAAGCTGAGGAGGATGAGGCGAA
AGCAATCGCTCAAAGTGTGAAACTTTCACCTTTGCAAACAGAGTATATTCAATTGAGTTATGCGAAAGCGGCAGATATTG
AAAAACTCATTACCCAGGGTAAAAATGGCTCAGGTAATAGTAATCAGGGGGGAGGTGGTTCCTTAGGTGATAGCGTAGGG
AGTTTATTGAGCCCACGTGGAACGGTTTCTATTGATCCGCGTACCAACACACTAATTGTAAATGATACTTCTCAGAAAAT
TGATCAGATCCGTAAAATGATCGATTTGCTTGATGTGTCGGTTAAACAAGTGATGATTGAAGCGCGTATTGTTCGTGCAA
GTACTGATTTTACAAAAGAAATGGGAGTTAAGTGGGGGATATTGTCACAAGGTATAACTTCGAATAACGACTTGTTGGTG
GGTGGCAGTGATACGACTTTGTGGAATTTAAGAGATCCTGAAAAGGATACTGATACTGGTGGTTGGAAATATGAGATTGA
ACGTCCCGATAACTTAAATGTAAATTTAGGTGCTGTAACTCCTGGTGCGAGTCGTATAGCTTTTGGCTTGATTAGTCTTT
CAGATTTTATGTTGGACTTAGAGTTATCAGCAGTTCAAGCTGATGGCTATGGTGAGGTAATCTCAACTCCGAAAGTTTTA
ACTGCTGATAAACAAGCTGCAAAAATTGAATCAGGAACTCAAATTCCATATTCATCTTCTACTGGTGGTGGAGCAAATGC
AGTTCCAAAAACGGAGTTCATTAATGCGACATTGAGTTTGGATGTTACACCGAGTATCACCCCTGAAGGTAAAGTGATGA
TGAAATTAAACATCACTAAAGATTCACCTGGAAATCCAACACCTACAGGGCAGCTGACGATTAATAAAAATACAATTGAT
ACCAATGTCGTGGTTGATAACGGTGAAACTGTTGTTCTTGGTGGAATTTTTGAGCAAGAAAATATTAATTCTCAGACCAA
AGTTCCATTCTTGGGTGATTTGCCTTATGTTGGGAAATTATTCCGTAGAGAGTCTAAACAAGACAATAAACGCGAGTTGC
TTATTTTTGTTACGCCGAGAATTGTTAATGACACTTTGACAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-122)

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II and III secretion system protein (Secretin)

(544-702)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.138

100

0.766
  pilQ Acinetobacter baumannii strain A118

75.138

100

0.766
  comQ Acinetobacter baylyi ADP1

73.574

100

0.745
  pilQ Pseudomonas aeruginosa PAK

40.603

98.169

0.399
  pilQ Legionella pneumophila strain ERS1305867

39.291

95.352

0.375
  pilQ Legionella pneumophila strain Lp02

39.111

95.07

0.372