Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   NGM19_RS14530 Genome accession   NZ_CP099548
Coordinates   3041621..3042361 (-) Length   246 a.a.
NCBI ID   WP_075696026.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ6079     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3036621..3047361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS14510 (NGM19_14510) aroB 3037217..3038299 (-) 1083 WP_042891731.1 3-dehydroquinate synthase -
  NGM19_RS14515 (NGM19_14515) aroK 3038320..3038880 (-) 561 WP_004909618.1 shikimate kinase AroK -
  NGM19_RS14520 (NGM19_14520) pilQ 3038900..3041032 (-) 2133 WP_252666000.1 type IV pilus secretin PilQ family protein Machinery gene
  NGM19_RS14525 (NGM19_14525) pilP 3041094..3041621 (-) 528 WP_252665716.1 pilus assembly protein PilP Machinery gene
  NGM19_RS14530 (NGM19_14530) pilO 3041621..3042361 (-) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  NGM19_RS14535 (NGM19_14535) pilN 3042358..3043002 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  NGM19_RS14540 (NGM19_14540) pilM 3043002..3044060 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  NGM19_RS14545 (NGM19_14545) ponA 3044223..3046802 (+) 2580 WP_004964607.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27775.32 Da        Isoelectric Point: 4.6196

>NTDB_id=700622 NGM19_RS14530 WP_075696026.1 3041621..3042361(-) (pilO) [Acinetobacter junii strain AJ6079]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASQDTTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=700622 NGM19_RS14530 WP_075696026.1 3041621..3042361(-) (pilO) [Acinetobacter junii strain AJ6079]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCGCTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAATTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCGGGGTTGAAGTTTAAGAATATTCGCCTAGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATTGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACGGGTATTGCGGCATTGCCTCGAATTGTAACTTT
ACATGATTTCACGGTTGAAGCATCACAAGATACGACGAAGAAGTCAGATATTCCTGTTGTGAATTACTCCGTTAAGGCAA
AGACCTATCGTTATGTGGGTGCTGATGATGCAGCAAATACTGAGGTTGGAGCGGCGGTACCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.065

100

0.724
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683