Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NGM19_RS14535 Genome accession   NZ_CP099548
Coordinates   3042358..3043002 (-) Length   214 a.a.
NCBI ID   WP_004909633.1    Uniprot ID   S7WRY4
Organism   Acinetobacter junii strain AJ6079     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3037358..3048002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS14515 (NGM19_14515) aroK 3038320..3038880 (-) 561 WP_004909618.1 shikimate kinase AroK -
  NGM19_RS14520 (NGM19_14520) pilQ 3038900..3041032 (-) 2133 WP_252666000.1 type IV pilus secretin PilQ family protein Machinery gene
  NGM19_RS14525 (NGM19_14525) pilP 3041094..3041621 (-) 528 WP_252665716.1 pilus assembly protein PilP Machinery gene
  NGM19_RS14530 (NGM19_14530) pilO 3041621..3042361 (-) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  NGM19_RS14535 (NGM19_14535) pilN 3042358..3043002 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  NGM19_RS14540 (NGM19_14540) pilM 3043002..3044060 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  NGM19_RS14545 (NGM19_14545) ponA 3044223..3046802 (+) 2580 WP_004964607.1 penicillin-binding protein PBP1a -
  NGM19_RS14550 (NGM19_14550) - 3046817..3047635 (-) 819 WP_004964610.1 putative RNA methyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23774.17 Da        Isoelectric Point: 5.1372

>NTDB_id=700623 NGM19_RS14535 WP_004909633.1 3042358..3043002(-) (pilN) [Acinetobacter junii strain AJ6079]
MAKINLLPWRDELREQRKKQFIAYCVGVAALGVASVLAGWGYLDYKLNDQEQANQLIVSTNQNLDAQLKSLDGLQERRNA
IIERMKLIQGLQGQRPVAVRLIDELVRVTPPTMYLTKFTRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKTVSSLIPRIEENYGSFVVTVDLGEIGTTVEADPLAETVASGTVGAAQ

Nucleotide


Download         Length: 645 bp        

>NTDB_id=700623 NGM19_RS14535 WP_004909633.1 3042358..3043002(-) (pilN) [Acinetobacter junii strain AJ6079]
ATGGCAAAGATTAACTTACTCCCTTGGCGTGATGAGCTAAGAGAACAACGAAAGAAACAATTTATTGCATATTGTGTAGG
GGTTGCTGCATTAGGTGTGGCATCGGTTTTGGCAGGATGGGGTTATCTTGATTACAAATTAAATGATCAAGAACAAGCGA
ACCAACTGATTGTGAGCACAAATCAAAATCTTGATGCTCAATTAAAATCCTTAGATGGCTTGCAAGAGCGACGTAATGCA
ATTATTGAACGGATGAAACTCATTCAAGGTTTGCAAGGTCAAAGACCTGTCGCTGTACGTTTAATCGATGAATTGGTGCG
AGTTACTCCGCCTACCATGTATTTGACTAAATTTACACGTACTGGCGATAAGTTCACGATTGAAGGTAAAGCTGAAAGTC
CAAACACAGTAGCTGAATTACTGAGAAATCTTGAAGCATCACCTTGGTATCGCAACGCTTTTATGAATTCCTTTTTAGCG
GCTGAAGAGAAAAAAGACAAAACCGTCAGCTCGCTTATACCTCGTATTGAAGAAAACTATGGAAGTTTTGTTGTAACTGT
TGATCTTGGTGAAATAGGTACAACAGTTGAAGCTGACCCATTAGCAGAAACGGTCGCATCAGGAACAGTGGGGGCAGCAC
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7WRY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

76.636

100

0.766
  comN Acinetobacter baylyi ADP1

73.333

98.131

0.72