Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NGM19_RS14525 Genome accession   NZ_CP099548
Coordinates   3041094..3041621 (-) Length   175 a.a.
NCBI ID   WP_252665716.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ6079     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3036094..3046621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS14505 (NGM19_14505) - 3036322..3037200 (-) 879 WP_151690684.1 hypothetical protein -
  NGM19_RS14510 (NGM19_14510) aroB 3037217..3038299 (-) 1083 WP_042891731.1 3-dehydroquinate synthase -
  NGM19_RS14515 (NGM19_14515) aroK 3038320..3038880 (-) 561 WP_004909618.1 shikimate kinase AroK -
  NGM19_RS14520 (NGM19_14520) pilQ 3038900..3041032 (-) 2133 WP_252666000.1 type IV pilus secretin PilQ family protein Machinery gene
  NGM19_RS14525 (NGM19_14525) pilP 3041094..3041621 (-) 528 WP_252665716.1 pilus assembly protein PilP Machinery gene
  NGM19_RS14530 (NGM19_14530) pilO 3041621..3042361 (-) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  NGM19_RS14535 (NGM19_14535) pilN 3042358..3043002 (-) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  NGM19_RS14540 (NGM19_14540) pilM 3043002..3044060 (-) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19400.64 Da        Isoelectric Point: 9.0014

>NTDB_id=700621 NGM19_RS14525 WP_252665716.1 3041094..3041621(-) (pilP) [Acinetobacter junii strain AJ6079]
MNNCKLLFSFMAGLVLVGCDSKIDAVNQKMAEIRNEPALPIEPAPVFSPVPLFNYSAHQLKSPFMPSSLAAELKIMAGKR
VYPNFNRQPQPLESYALESLNMKGSMRGKTNETIALIQTPDRQIERVQVGNYLGMNQGRVVKISPTQIDLVEIVPDGRDG
YVERPRTLVLIGMAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=700621 NGM19_RS14525 WP_252665716.1 3041094..3041621(-) (pilP) [Acinetobacter junii strain AJ6079]
ATGAATAATTGTAAATTATTGTTTAGTTTTATGGCTGGGCTTGTTTTGGTTGGATGTGATTCAAAAATTGATGCTGTAAA
CCAAAAAATGGCTGAAATTCGGAACGAACCTGCTTTACCTATTGAGCCAGCACCGGTATTTAGCCCTGTACCATTATTTA
ACTATTCAGCACATCAATTGAAAAGTCCATTTATGCCAAGCTCATTGGCGGCTGAGTTAAAGATAATGGCGGGTAAACGC
GTTTATCCAAATTTCAATCGTCAACCGCAACCACTGGAAAGTTATGCGTTGGAATCCCTAAATATGAAGGGTAGCATGCG
TGGTAAAACCAATGAAACGATAGCACTGATTCAGACCCCTGATCGACAAATTGAGCGGGTGCAGGTTGGAAACTACTTAG
GAATGAATCAAGGTCGAGTGGTAAAAATTAGTCCGACTCAGATTGATTTGGTGGAAATTGTACCAGATGGGCGTGATGGT
TATGTGGAGAGACCAAGAACACTCGTTCTAATTGGTATGGCACCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

79.532

97.714

0.777
  comL Acinetobacter baylyi ADP1

70.286

100

0.703