Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NGM19_RS01970 Genome accession   NZ_CP099548
Coordinates   429731..430957 (-) Length   408 a.a.
NCBI ID   WP_125318236.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ6079     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 424731..435957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS01945 (NGM19_01945) - 426066..426392 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  NGM19_RS01950 (NGM19_01950) rlmB 426582..427331 (+) 750 WP_151711193.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NGM19_RS01955 (NGM19_01955) - 427362..428273 (+) 912 WP_151711192.1 DMT family transporter -
  NGM19_RS01960 (NGM19_01960) coaE 428270..428869 (-) 600 WP_151711191.1 dephospho-CoA kinase -
  NGM19_RS01965 (NGM19_01965) pilD 428871..429731 (-) 861 WP_151711190.1 A24 family peptidase Machinery gene
  NGM19_RS01970 (NGM19_01970) pilC 429731..430957 (-) 1227 WP_125318236.1 type II secretion system F family protein Machinery gene
  NGM19_RS01975 (NGM19_01975) pilB 430982..432706 (-) 1725 WP_125318237.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NGM19_RS01980 (NGM19_01980) tpiA 433052..433843 (+) 792 WP_004958617.1 triose-phosphate isomerase -
  NGM19_RS01985 (NGM19_01985) secG 433856..434185 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -
  NGM19_RS02005 (NGM19_02005) rimP 434808..435332 (+) 525 WP_004916844.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45069.48 Da        Isoelectric Point: 9.8960

>NTDB_id=700599 NGM19_RS01970 WP_125318236.1 429731..430957(-) (pilC) [Acinetobacter junii strain AJ6079]
MVAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGFMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKNEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFTSFGADLPAFTQMVVNMSKWMQEYWFILIIAIGIFIT
GFLEAKKRSKKFRDTLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALTSTAGATNNVVYEEAVLKIREDVA
TGQQLQFAMRVSNRFPAMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=700599 NGM19_RS01970 WP_125318236.1 429731..430957(-) (pilC) [Acinetobacter junii strain AJ6079]
ATGGTAGCGAAAAAAGCGCAAATGATGCCTACTTTTGCCTATGAAGGGGTCGATCGTAAAGGGGCAAAAATTAAAGGGGA
ACTTCCAGCACGTAATATGGCTTTAGCAAAAGTCACCTTACGTAAACAAGGCGTGACGATTAAAAATATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTTTTATGAAGAAAAAAGTAACGACCTTGGATATCACGGTTTTCACACGCCAATTAGCAACA
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTTGCAGAAGGTTTAGAAAACCCATCCATGCGTGAGGT
CGTATTAGGTTTAAAAAACGAAGTTGAAGGCGGTAATACTTTTGCTGGTGCTTTAAGAAAATATCCTCAATATTTCGACA
ATTTATTTTGTTCACTCGTCGAATCTGGTGAACAATCAGGTGCCCTTGAAACGATGCTAGATCGTGTTGCTGTTTATAAA
GAAAAAAGTGAATTACTCAAACAAAAAATTAAAAAAGCGATGAAATATCCTGCCACTGTTATCGTTGTAGCTGTAATTGT
AACAATCATTCTAATGGTTAAGGTAGTACCCGTTTTCCAAGACCTCTTTACATCCTTTGGAGCTGATCTACCAGCTTTTA
CCCAAATGGTTGTAAATATGTCTAAATGGATGCAAGAGTATTGGTTTATCCTCATTATTGCTATAGGTATTTTTATCACA
GGATTCTTGGAGGCAAAAAAACGTAGTAAAAAGTTTAGAGATACATTGGATAAGCTTGCTCTAAAATTGCCAATCTTTGG
TGATCTCGTATACAAAGCAATTATTGCTCGTTACAGTCGTACACTAGCAACGACATTTGCGGCGGGCGTGCCATTAATTG
ATGCGCTTACATCTACAGCAGGTGCAACCAATAATGTTGTTTATGAAGAAGCTGTACTTAAGATTAGAGAAGATGTTGCG
ACTGGACAACAACTTCAATTTGCTATGCGTGTTTCAAACCGCTTCCCTGCTATGGCAATTCAAATGGTCGCAATTGGTGA
AGAGTCAGGTGCACTTGATTCGATGTTAGATAAAGTCGCGACACACTATGAAAATGAGGTCGACAACGCAGTCGATGGTC
TGACTTCGATGATGGAACCTCTTATTATGGCAATACTTGGTGTGTTAGTGGGTGGTCTCGTTATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.157

100

0.922
  pilC Acinetobacter baylyi ADP1

87.01

100

0.87
  pilC Pseudomonas stutzeri DSM 10701

60.442

99.755

0.603
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

41.584

99.02

0.412
  pilC Thermus thermophilus HB27

36.908

98.284

0.363