Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NGM19_RS01965 Genome accession   NZ_CP099548
Coordinates   428871..429731 (-) Length   286 a.a.
NCBI ID   WP_151711190.1    Uniprot ID   -
Organism   Acinetobacter junii strain AJ6079     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423871..434731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM19_RS01945 (NGM19_01945) - 426066..426392 (+) 327 WP_004958605.1 pyrimidine/purine nucleoside phosphorylase -
  NGM19_RS01950 (NGM19_01950) rlmB 426582..427331 (+) 750 WP_151711193.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NGM19_RS01955 (NGM19_01955) - 427362..428273 (+) 912 WP_151711192.1 DMT family transporter -
  NGM19_RS01960 (NGM19_01960) coaE 428270..428869 (-) 600 WP_151711191.1 dephospho-CoA kinase -
  NGM19_RS01965 (NGM19_01965) pilD 428871..429731 (-) 861 WP_151711190.1 A24 family peptidase Machinery gene
  NGM19_RS01970 (NGM19_01970) pilC 429731..430957 (-) 1227 WP_125318236.1 type II secretion system F family protein Machinery gene
  NGM19_RS01975 (NGM19_01975) pilB 430982..432706 (-) 1725 WP_125318237.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NGM19_RS01980 (NGM19_01980) tpiA 433052..433843 (+) 792 WP_004958617.1 triose-phosphate isomerase -
  NGM19_RS01985 (NGM19_01985) secG 433856..434185 (+) 330 WP_004916847.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32046.62 Da        Isoelectric Point: 7.5073

>NTDB_id=700598 NGM19_RS01965 WP_151711190.1 428871..429731(-) (pilD) [Acinetobacter junii strain AJ6079]
MQSFFLYFLENPTALYLAVGLISLCIGSFLNVVIFRTPKMMEQEWHQECQMLLHHEQPIIDQSKLTLSQPVSTCPKCQTP
IKWFQNIPLISWLALRGKCGTCQNPISIRYPLIELLTMICSLIVVAVFGATIQMLFGLILTWTLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFAIYTTASAAIWGYLIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSM
VGAIIGIMLMKMRGENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=700598 NGM19_RS01965 WP_151711190.1 428871..429731(-) (pilD) [Acinetobacter junii strain AJ6079]
ATGCAATCTTTTTTCCTTTACTTTTTAGAAAATCCAACTGCACTTTACCTTGCAGTTGGATTAATCAGTCTGTGCATCGG
AAGTTTTTTAAATGTTGTGATCTTTCGCACTCCAAAAATGATGGAGCAAGAATGGCATCAAGAATGCCAAATGCTTTTAC
ACCATGAACAGCCGATCATAGATCAGAGCAAGTTAACATTAAGTCAGCCAGTTTCTACCTGCCCTAAGTGTCAAACGCCA
ATTAAATGGTTCCAAAACATCCCTCTTATTAGTTGGTTAGCGCTACGAGGTAAATGTGGCACTTGCCAAAACCCAATTAG
CATTCGCTACCCGCTGATTGAACTACTTACTATGATCTGCTCATTGATCGTTGTGGCGGTATTCGGTGCAACAATTCAGA
TGCTGTTCGGCTTAATTCTAACTTGGACACTGATTGCACTCACTTTTATTGATTTTGATACACAATTACTACCTGATCGA
TTTACGCTACCTTTAGCAGCATTAGGTCTAGGTATTAATACTTTTGCAATCTATACAACGGCTAGTGCTGCGATCTGGGG
CTATTTAATCGGTTTTCTATGTCTTTGGATTGTGTATTACCTATTTAAAATCATCACTGGCAAAGAAGGCATGGGCTATG
GAGATTTTAAACTGCTTGCCGCCCTTGGTGCATGGATGGGTCCGATGATGCTACCCCTCATCGTATTACTCTCTTCTATG
GTAGGCGCAATTATTGGTATTATGCTGATGAAAATGCGCGGTGAAAATCAACCTTTTGCATTTGGTCCTTATATTGCAAT
TGCCGGTTGGATTGCCTTTCTATGGGGTGAGCAAATTATGAAAGTGTATCTTGGGGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.469

100

0.815
  pilD Acinetobacter baumannii D1279779

81.119

100

0.811
  pilD Vibrio cholerae strain A1552

51.22

100

0.514
  pilD Vibrio campbellii strain DS40M4

51.504

93.007

0.479
  pilD Neisseria gonorrhoeae MS11

46.154

95.455

0.441