Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NGM67_RS05620 Genome accession   NZ_CP099545
Coordinates   81216..82310 (+) Length   364 a.a.
NCBI ID   WP_005302146.1    Uniprot ID   -
Organism   Photobacterium damselae strain XP-11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 76216..87310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM67_RS05600 (NGM67_05600) rsmB 76981..78258 (-) 1278 WP_106142306.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NGM67_RS05605 (NGM67_05605) fmt 78397..79341 (-) 945 WP_252690057.1 methionyl-tRNA formyltransferase -
  NGM67_RS05610 (NGM67_05610) def 79354..79866 (-) 513 WP_068945797.1 peptide deformylase -
  NGM67_RS05615 (NGM67_05615) - 80155..81213 (+) 1059 WP_138241216.1 LysM peptidoglycan-binding domain-containing protein -
  NGM67_RS05620 (NGM67_05620) dprA 81216..82310 (+) 1095 WP_005302146.1 DNA-processing protein DprA Machinery gene
  NGM67_RS05625 (NGM67_05625) - 82313..82786 (+) 474 WP_036764597.1 DUF494 family protein -
  NGM67_RS05630 (NGM67_05630) - 82897..83454 (+) 558 WP_005302142.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  NGM67_RS05635 (NGM67_05635) - 83522..84643 (-) 1122 WP_176284912.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NGM67_RS05640 (NGM67_05640) purE 84646..85131 (-) 486 WP_005302138.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NGM67_RS05645 (NGM67_05645) - 85324..85881 (+) 558 WP_044178827.1 L-threonylcarbamoyladenylate synthase -
  NGM67_RS05650 (NGM67_05650) hemF 85885..86796 (+) 912 WP_068945803.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39164.20 Da        Isoelectric Point: 6.4262

>NTDB_id=700555 NGM67_RS05620 WP_005302146.1 81216..82310(+) (dprA) [Photobacterium damselae strain XP-11]
MDNIHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVAAIKHPDNKKIDLALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDSQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAASIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAIPGSIYNPASRGCNALIKSGAKLVESAQDIFEEVGALTECAINHQLSQALPETENEQLPFPELLATVGSE
VIPVDVLAERSQMPVHDVMTQLLELELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=700555 NGM67_RS05620 WP_005302146.1 81216..82310(+) (dprA) [Photobacterium damselae strain XP-11]
ATGGACAATATCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGTCACCGTATCAGTCGTTTATTACAACA
TGCAATGCCAGAGCAAATTATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTTGCCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTTGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTTTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGTGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTAGGCATCGATAGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACCATTGCCGTTTTAGGTTCAGGGCTGGAGCAGATTTATCCCGCATGCCACAAATCGTTAGCTGCAAG
CATTGTTGAGCAGGGCGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGGGCCCAATTTTTTCCACGTAGAAACC
GGATTATTAGCGGTTTATCTGTTGGGGTATTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAGCAAGGCCGAGAGGTCTTTGCTATACCTGGTTCTATTTATAATCCCGCCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCAAGATATTTTCGAGGAGGTAGGAGCCCTAACAGAATGCGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCGAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCATGATGTCATGACGCAATTATTAGAATTAGAATT
GCTCGGATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.923

99.725

0.558
  dprA Vibrio cholerae strain A1552

51.587

100

0.536
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.489
  dprA Legionella pneumophila strain ERS1305867

43.631

100

0.442
  dprA Haemophilus influenzae Rd KW20

46.018

93.132

0.429
  dprA Neisseria meningitidis strain C311

44.237

88.187

0.39
  dprA Neisseria meningitidis MC58

44.237

88.187

0.39
  dprA Acinetobacter baumannii strain A118

42.901

89.011

0.382
  dprA Neisseria gonorrhoeae MS11

43.26

87.637

0.379
  dprA Neisseria gonorrhoeae strain FA1090

42.633

87.637

0.374
  dprA Acinetobacter baylyi ADP1

45.27

81.319

0.368