Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NGM67_RS05545 Genome accession   NZ_CP099545
Coordinates   64707..66239 (+) Length   510 a.a.
NCBI ID   WP_065171004.1    Uniprot ID   A0A1X9U4U6
Organism   Photobacterium damselae strain XP-11     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 59707..71239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGM67_RS05530 (NGM67_05530) - 61292..62221 (-) 930 WP_065171002.1 branched-chain amino acid transaminase -
  NGM67_RS05535 (NGM67_05535) ilvM 62261..62518 (-) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  NGM67_RS05540 (NGM67_05540) ilvG 62521..64167 (-) 1647 WP_252690054.1 acetolactate synthase 2 catalytic subunit -
  NGM67_RS05545 (NGM67_05545) comM 64707..66239 (+) 1533 WP_065171004.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NGM67_RS05550 (NGM67_05550) - 66306..66905 (-) 600 WP_370466075.1 thiol:disulfide interchange protein DsbA/DsbL -
  NGM67_RS05555 (NGM67_05555) - 66995..67984 (-) 990 WP_005302181.1 serine/threonine protein kinase -
  NGM67_RS05560 (NGM67_05560) ccoG 68027..69364 (-) 1338 WP_252690055.1 cytochrome c oxidase accessory protein CcoG -
  NGM67_RS05565 (NGM67_05565) - 69553..69819 (-) 267 WP_005302176.1 YihD family protein -
  NGM67_RS05570 (NGM67_05570) - 69995..70168 (-) 174 WP_005302173.1 hypothetical protein -
  NGM67_RS05575 (NGM67_05575) - 70549..71223 (+) 675 WP_065171008.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55121.40 Da        Isoelectric Point: 8.2787

>NTDB_id=700554 NGM67_RS05545 WP_065171004.1 64707..66239(+) (comM) [Photobacterium damselae strain XP-11]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKARVNQARTLMDQRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=700554 NGM67_RS05545 WP_065171004.1 64707..66239(+) (comM) [Photobacterium damselae strain XP-11]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTAACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCTCCCGCTGATTTGCCTAAAGAAGGGGGCCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCTGCTTCAGGACAAATACCCGCAGAATCACTGCATAAATACGAATTTTT
AGGGGAGTTGGCTTTATCAGGGCAATTGCGTCCGGTAAAGGGGGCACTGCCTGCTGCTCTTGCTGCATTAAAAGCGAAAA
GGTGTTTGATTGTCCCTGATCGTAATGGAGATCAAGTGGCATTAGTAGGCGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCTCACCTATTAGGACAGCAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGGGCATTGGAAATTGCAGCTGCCGGTG
GCCATAACCTTCTGTTTCTTGGGCCGCCAGGAACGGGAAAAACCATGTTAGCCTCTCGCTTATGTGATTTATTACCTCCT
ATGAGCCATGATGAGGCGTTAGAAACCGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGTGCACCTCATCATTCAAGCTCTATGGCTGCCTTAGTTGGTGGTGGTTCAATTCCAAGGCCAGGAGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGTGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCGGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGATTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AGCTCTCTGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCAGCTCTGCCGAAAGGTACTTTAGCTCAAGGT
GGTGAGCGCGGTGAGAGTACTCCAGTGATTAAAGCGCGAGTTAATCAGGCGCGAACCTTAATGGATCAGCGAGCAGGAAA
AGTGAATGCTCGACTTTCGACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CATTGCATCAGTTGGGGTTATCGATTCGTGCGTACCACCGCATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCGTTAGGATATCGAGCAATGGATCGGTTATTGAAGCAGTTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X9U4U6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.863

100

0.769
  comM Vibrio cholerae strain A1552

76.471

100

0.765
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.699

97.843

0.486
  comM Legionella pneumophila strain ERS1305867

49.699

97.843

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427