Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NG824_RS15455 Genome accession   NZ_CP099534
Coordinates   3591090..3592349 (+) Length   419 a.a.
NCBI ID   WP_267092678.1    Uniprot ID   -
Organism   Xanthomonas sacchari strain JR3-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3586090..3597349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG824_RS15440 (NG824_15425) pilR 3586867..3588255 (+) 1389 WP_043095008.1 sigma-54 dependent transcriptional regulator Regulator
  NG824_RS15445 (NG824_15430) pilB 3588486..3590216 (-) 1731 WP_267092676.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NG824_RS15450 (NG824_15435) pilA/pilAI 3590313..3590723 (-) 411 WP_267092677.1 pilin Machinery gene
  NG824_RS15455 (NG824_15440) pilC 3591090..3592349 (+) 1260 WP_267092678.1 type II secretion system F family protein Machinery gene
  NG824_RS15460 (NG824_15445) - 3592356..3593219 (+) 864 WP_267092679.1 A24 family peptidase -
  NG824_RS15465 (NG824_15450) coaE 3593233..3593862 (+) 630 WP_267092680.1 dephospho-CoA kinase -
  NG824_RS15470 (NG824_15455) - 3593972..3595306 (-) 1335 WP_148828478.1 HAMP domain-containing sensor histidine kinase -
  NG824_RS15475 (NG824_15460) - 3595299..3595976 (-) 678 WP_010340533.1 response regulator transcription factor -
  NG824_RS15480 (NG824_15465) - 3596160..3596342 (-) 183 WP_267092681.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45761.18 Da        Isoelectric Point: 10.1706

>NTDB_id=700481 NG824_RS15455 WP_267092678.1 3591090..3592349(+) (pilC) [Xanthomonas sacchari strain JR3-14]
MSATRSAVKKEPVARTTSQQVPFVWEGTDKRGVKMKGEQVAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGKKISPKD
IAFFSRQMATMMKSGVPIVGSLEIIASGHKNPRMKKMVDQIRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALIVTSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWM
LLLLLIGTIGGFIFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYET
AVLRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=700481 NG824_RS15455 WP_267092678.1 3591090..3592349(+) (pilC) [Xanthomonas sacchari strain JR3-14]
ATGTCCGCAACTCGCAGCGCAGTCAAGAAAGAGCCGGTCGCGCGCACTACCAGCCAACAGGTGCCCTTCGTCTGGGAAGG
CACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAAGTCGCCAAGAATGCCAACCTATTGCGCGCAGAGCTGCGCCGTC
AGGGCATTACCCCTTCGGTGGTCAAGCCCAAGCCCAAACCGTTGTTTGGTGCCGCTGGCAAGAAGATTAGCCCCAAGGAC
ATCGCCTTCTTCAGCCGACAGATGGCAACGATGATGAAGTCGGGCGTGCCGATTGTTGGTTCGCTTGAGATCATCGCCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGACCAGATACGCACCGATATCGAGGGCGGCTCATCCCTGTACGAGG
CGATCAGCAAGCATCCGGTGCAGTTCGACGAGTTGTACCGCAATCTGGTCAAGGCCGGCGAAGGCGCCGGCGTGCTCGAG
ACGGTGCTGGAGACGGTTGCCACCTATAAAGAGAATATCGAGGCACTGAAGGGCAAGATCAAGAAGGCCTTGTTCTACCC
GGCCATGGTGATGGCGGTTGCCCTGATCGTCACTTCGATCCTACTGGTCTGGGTCGTTCCACAGTTTGAGGATGTGTTCA
AGGGCTTCGGTGCGGAGCTACCGGCCTTTACCCAGATGATCGTTGCTGCATCTCGCTTCATGGTGGCTTACTGGTGGATG
CTGTTGCTCTTGTTGATCGGCACCATCGGCGGCTTCATCTTCGCCTACAAACGTTCGCCTGCGATGCAGCACGGGATGGA
CCGACTGGTGCTCAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCGGTCGCGCGCTTCTCGCGCACCTTGGCGG
TGACCTTCCGCGCCGGTGTACCGCTGGTGGAGGCCCTTGACATCGTCGCCGGCGCCACCGGCAATAGCGTCTACGAGACG
GCTGTACTGCGCATGCGTGACGACGTGGCGGTCGGCTACCCGGTCAATGTGGCGATGAAGCAGACCAATCTGTTTCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAGGCCGGCGCGCTGGATGCCATGCTGTTCAAGGTCGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCCTTGAGCAGCCTGATCGAGCCGTTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Acinetobacter baylyi ADP1

51.961

97.375

0.506
  pilC Acinetobacter baumannii D1279779

52.109

96.181

0.501
  pilC Legionella pneumophila strain ERS1305867

53.03

94.511

0.501
  pilG Neisseria gonorrhoeae MS11

43.75

95.465

0.418
  pilG Neisseria meningitidis 44/76-A

43.25

95.465

0.413
  pilC Vibrio cholerae strain A1552

42.469

96.659

0.41
  pilC Vibrio campbellii strain DS40M4

40.452

94.988

0.384