Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NG824_RS15440 Genome accession   NZ_CP099534
Coordinates   3586867..3588255 (+) Length   462 a.a.
NCBI ID   WP_043095008.1    Uniprot ID   A0AAW9GVB5
Organism   Xanthomonas sacchari strain JR3-14     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3581867..3593255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NG824_RS15425 (NG824_15410) sucD 3582712..3583587 (-) 876 WP_010342226.1 succinate--CoA ligase subunit alpha -
  NG824_RS15430 (NG824_15415) sucC 3583610..3584779 (-) 1170 WP_010342227.1 ADP-forming succinate--CoA ligase subunit beta -
  NG824_RS15435 (NG824_15420) - 3585171..3586784 (+) 1614 WP_267092675.1 ATP-binding protein -
  NG824_RS15440 (NG824_15425) pilR 3586867..3588255 (+) 1389 WP_043095008.1 sigma-54 dependent transcriptional regulator Regulator
  NG824_RS15445 (NG824_15430) pilB 3588486..3590216 (-) 1731 WP_267092676.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NG824_RS15450 (NG824_15435) pilA/pilAI 3590313..3590723 (-) 411 WP_267092677.1 pilin Machinery gene
  NG824_RS15455 (NG824_15440) pilC 3591090..3592349 (+) 1260 WP_267092678.1 type II secretion system F family protein Machinery gene
  NG824_RS15460 (NG824_15445) - 3592356..3593219 (+) 864 WP_267092679.1 A24 family peptidase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49908.29 Da        Isoelectric Point: 6.6703

>NTDB_id=700478 NG824_RS15440 WP_043095008.1 3586867..3588255(+) (pilR) [Xanthomonas sacchari strain JR3-14]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAKHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIQVLRGLVKHALELNNESRAAPPQPAPEQASRLLGASAAMDALRSTIAKVAR
NQAPVYILGESGVGKELVARTIHEQGARSAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLADLVAEGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKSHGRPTPLLSPSALDALSSYAFPGNVRELENILERALAMAEDDQISATDLRLPQPGNHARSAAEAAPA
LPRGVVDIDPSSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=700478 NG824_RS15440 WP_043095008.1 3586867..3588255(+) (pilR) [Xanthomonas sacchari strain JR3-14]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAGCGCGACATCCGCGAGTTGCTGGTCCTGACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCGCGCGAACTGCTGGCGAGCAATCCCTACGATCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCAAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCCAGGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACGAAAGCCGCGCCGCGCCGCCGCAGCCTG
CCCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGCCCTGCGCAGCACCATCGCCAAGGTCGCGCGC
AACCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTCGCGCGCACCATCCACGAACAGGGCGC
CCGCTCCGCCGGCCCCTTCGTCCCGGTGAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTCGAC
GAGGTCGCCGAACTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTCCGCCCGGTCGGCGC
CGCCACCGAGGTGCCGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGAGGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCCGCTGCGATCCTGGCGCGGCTGGCCAAGAGCCACGGCCGCCCCACCCCGCTGCTGTCGCCCTCCGCCCTGGA
CGCCCTGAGCAGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAGCGCGCCCTGGCAATGGCCGAGG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCGCAACCCGGCAACCACGCCCGCAGCGCCGCCGAAGCCGCCCCGGCC
CTGCCGCGCGGCGTGGTCGACATCGACCCCAGCTCCTCCGCCCTGCCGTCCTACATCGAGCAACTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGTTGGAACAAGACCCGCACCGCCGCGCAGCTGGGCATCACCTTTCGGGCGTTGCGCT
ACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.826

99.567

0.626
  pilR Acinetobacter baumannii strain A118

47.084

100

0.472