Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   NDL72_RS00500 Genome accession   NZ_CP098505
Coordinates   104987..105586 (-) Length   199 a.a.
NCBI ID   WP_003700890.1    Uniprot ID   A0AB74ESA6
Organism   Neisseria gonorrhoeae strain 10536     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99987..110586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL72_RS00485 (NDL72_00485) pilQ 101562..103757 (-) 2196 WP_003687350.1 type IV pilus secretin PilQ Machinery gene
  NDL72_RS00490 (NDL72_00490) pilP 103776..104321 (-) 546 WP_003687351.1 pilus assembly protein PilP Machinery gene
  NDL72_RS00495 (NDL72_00495) - 104339..104986 (-) 648 WP_003690570.1 type 4a pilus biogenesis protein PilO -
  NDL72_RS00500 (NDL72_00500) pilN 104987..105586 (-) 600 WP_003700890.1 PilN domain-containing protein Machinery gene
  NDL72_RS00505 (NDL72_00505) pilM 105589..106704 (-) 1116 WP_003696683.1 type IV pilus biogenesis protein PilM -
  NDL72_RS00510 (NDL72_00510) - 106856..109252 (+) 2397 WP_003690571.1 penicillin-binding protein 1A -
  NDL72_RS00515 (NDL72_00515) yihA 109373..110002 (-) 630 WP_003687358.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22182.59 Da        Isoelectric Point: 10.1157

>NTDB_id=696406 NDL72_RS00500 WP_003700890.1 104987..105586(-) (pilN) [Neisseria gonorrhoeae strain 10536]
MNNLIKINLLPYREEMNKRKQQQFKTLMYGAVLTGVAAVAATYLFIDNMINKQSEKNTLLEISIAHLDTELSKIQKLKQE
KDAFLIKKNKIGELQIKRLQAAKILDSLNEAVPGSTYLTSLDAVTADSYRLSGRTSSDNRVAAMMRAMPNTGIFKQPELL
SIKKNNSHQEFTLQATLQPIVKAAESKENPASGNAQEAN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=696406 NDL72_RS00500 WP_003700890.1 104987..105586(-) (pilN) [Neisseria gonorrhoeae strain 10536]
ATGAACAATTTAATCAAAATCAACCTCCTCCCCTACAGGGAAGAGATGAACAAACGCAAACAGCAGCAGTTTAAAACGCT
GATGTACGGCGCCGTGCTGACGGGCGTTGCCGCCGTTGCGGCAACCTACCTGTTTATCGACAATATGATCAATAAACAGT
CGGAAAAAAACACGCTGCTGGAAATCTCCATCGCACACTTGGATACCGAGCTGTCGAAAATACAAAAGCTCAAACAGGAA
AAAGATGCCTTCCTGATTAAGAAAAACAAAATCGGGGAGCTCCAGATCAAACGCCTCCAAGCCGCAAAAATCCTCGACAG
CCTGAATGAGGCCGTCCCCGGAAGCACCTACCTAACCTCGCTGGATGCCGTTACCGCCGACTCTTATCGGCTCAGCGGCA
GGACATCCAGCGACAACCGCGTTGCCGCCATGATGAGGGCGATGCCCAATACCGGCATATTCAAGCAACCCGAATTGTTA
AGCATCAAGAAAAACAATTCGCATCAAGAATTTACCCTTCAGGCAACATTACAACCTATCGTAAAGGCGGCCGAATCCAA
AGAGAATCCGGCTTCGGGAAACGCACAGGAGGCAAACTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

96.985

100

0.97