Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M8286_RS00815 Genome accession   NZ_CP097577
Coordinates   132223..132618 (+) Length   131 a.a.
NCBI ID   WP_044678997.1    Uniprot ID   A0A0Z8JN20
Organism   Streptococcus suis strain 3112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 127223..137618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS00785 (M8286_00780) pepA 127498..128559 (-) 1062 WP_275601176.1 glutamyl aminopeptidase -
  M8286_RS00790 (M8286_00785) - 129112..129396 (+) 285 WP_024383185.1 DUF4651 domain-containing protein -
  M8286_RS00795 (M8286_00790) - 129393..129713 (+) 321 WP_275601178.1 thioredoxin family protein -
  M8286_RS00800 (M8286_00795) - 129758..130714 (+) 957 WP_275601179.1 DUF1002 domain-containing protein -
  M8286_RS00805 (M8286_00800) ytpR 130733..131356 (+) 624 WP_275601180.1 YtpR family tRNA-binding protein -
  M8286_RS00810 (M8286_00805) - 131389..132168 (-) 780 WP_275601181.1 DUF2785 domain-containing protein -
  M8286_RS00815 (M8286_00810) ssbA 132223..132618 (+) 396 WP_044678997.1 single-stranded DNA-binding protein Machinery gene
  M8286_RS00820 (M8286_00815) - 133080..133247 (-) 168 WP_171992299.1 hypothetical protein -
  M8286_RS00825 (M8286_00820) groES 133445..133726 (+) 282 WP_014637330.1 co-chaperone GroES -
  M8286_RS00830 (M8286_00825) groL 133737..135359 (+) 1623 WP_044673576.1 chaperonin GroEL -
  M8286_RS00835 (M8286_00830) rpsL 135591..136004 (+) 414 WP_275601182.1 30S ribosomal protein S12 -
  M8286_RS00840 (M8286_00835) rpsG 136021..136491 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14868.73 Da        Isoelectric Point: 5.0026

>NTDB_id=690319 M8286_RS00815 WP_044678997.1 132223..132618(+) (ssbA) [Streptococcus suis strain 3112]
MYNKTILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=690319 M8286_RS00815 WP_044678997.1 132223..132618(+) (ssbA) [Streptococcus suis strain 3112]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACGCCAACTGGCAAAAATTTGAC
TCGTGTAACAGTCGCAGTCAATCGACGATTTAAGACAGAAAACGGTGAGCGTGAAGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAGACACTTGTCTCCTATGGCAGCAAGGGTAGTCTGATTTCTATTGACGGTGAGTTGCGGACCCGT
AAATACGAAAAAGACGGCAGCAACCACTATGTGACCGAAATTTTGGGCAATACCTTCCAGTTGCTCGAAAGCCGTGCCCA
ACGTGCCATGCGAGAAAATAATACTGGCGATGACCTAGCTGACTTGGTCTTGGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8JN20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366