Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OSZ59_RS27310 Genome accession   NZ_CP113106
Coordinates   5799594..5800682 (-) Length   362 a.a.
NCBI ID   WP_033937965.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain BIAI 157     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5794594..5805682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSZ59_RS27285 (OSZ59_27285) - 5794922..5795908 (-) 987 WP_003111200.1 phospholipase C -
  OSZ59_RS27290 (OSZ59_27290) aroE 5796019..5796843 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  OSZ59_RS27295 (OSZ59_27295) hemF 5796901..5797818 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  OSZ59_RS27300 (OSZ59_27300) - 5798009..5798986 (+) 978 WP_003111202.1 NADPH:quinone reductase -
  OSZ59_RS27305 (OSZ59_27305) - 5798996..5799553 (-) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  OSZ59_RS27310 (OSZ59_27310) dprA 5799594..5800682 (-) 1089 WP_033937965.1 DNA-processing protein DprA Machinery gene
  OSZ59_RS27315 (OSZ59_27315) tsaP 5800817..5801842 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OSZ59_RS27320 (OSZ59_27320) def 5801981..5802487 (+) 507 WP_003107059.1 peptide deformylase -
  OSZ59_RS27325 (OSZ59_27325) fmt 5802542..5803486 (+) 945 WP_017001989.1 methionyl-tRNA formyltransferase -
  OSZ59_RS27330 (OSZ59_27330) rsmB 5803483..5804787 (+) 1305 WP_267749922.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37717.29 Da        Isoelectric Point: 7.0670

>NTDB_id=689595 OSZ59_RS27310 WP_033937965.1 5799594..5800682(-) (dprA) [Pseudomonas aeruginosa strain BIAI 157]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITVRLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLCELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=689595 OSZ59_RS27310 WP_033937965.1 5799594..5800682(-) (dprA) [Pseudomonas aeruginosa strain BIAI 157]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGTGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCTGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

43.243

100

0.442
  dprA Legionella pneumophila strain ERS1305867

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.972

98.066

0.412
  dprA Glaesserella parasuis strain SC1401

41.21

95.856

0.395
  dprA Acinetobacter baumannii D1279779

37.569

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Acinetobacter baumannii strain A118

37.892

96.961

0.367
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367