Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M5524_RS06865 Genome accession   NZ_CP097466
Coordinates   1582126..1583340 (-) Length   404 a.a.
NCBI ID   WP_373990705.1    Uniprot ID   -
Organism   Duganella sp. BuS-21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1577126..1588340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5524_RS06830 (M5524_06805) yacG 1577202..1577375 (-) 174 WP_373990698.1 DNA gyrase inhibitor YacG -
  M5524_RS06835 (M5524_06810) zapD 1577385..1578140 (-) 756 WP_373990699.1 cell division protein ZapD -
  M5524_RS06840 (M5524_06815) coaE 1578247..1578864 (-) 618 WP_373990700.1 dephospho-CoA kinase -
  M5524_RS06845 (M5524_06820) pilD 1578861..1579733 (-) 873 WP_373990701.1 A24 family peptidase Machinery gene
  M5524_RS06850 (M5524_06825) - 1579889..1580677 (+) 789 WP_373990702.1 sensor histidine kinase -
  M5524_RS06855 (M5524_06830) - 1580674..1581327 (-) 654 WP_373990703.1 response regulator -
  M5524_RS06860 (M5524_06835) - 1581490..1582122 (+) 633 WP_373990704.1 cysteine hydrolase family protein -
  M5524_RS06865 (M5524_06840) pilC 1582126..1583340 (-) 1215 WP_373990705.1 type II secretion system F family protein Machinery gene
  M5524_RS06870 (M5524_06845) pilF 1583351..1585090 (-) 1740 WP_373990706.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M5524_RS06875 (M5524_06850) - 1585221..1586501 (-) 1281 WP_373990707.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44214.07 Da        Isoelectric Point: 9.8997

>NTDB_id=689581 M5524_RS06865 WP_373990705.1 1582126..1583340(-) (pilC) [Duganella sp. BuS-21]
MATSGNQVKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKAYRSGKKVSDKDITLFTRQLATMMKA
GVPLLQSFDIVGKGHANPSVSKLVMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTQ
AMKAKIKSALMYPVSILAVAFLVTAVIMIWVVPAFKEVFTSFGANLPAPTLFVMAVSEFFVTWWWLIFGGLFAAIYFFFR
AWQRSLQMQRFMDKLLLRLPIFGDVIRKATVARWTRTLSTMFAAGVPLVESLDSVGGAAGNAVYLDATRKIQTEVSTGTS
LTVAMQNADVFPNMVTQMVSIGEESGSLDAMLAKVADFYEEEVDDAVASLSSLMEPAIMVILGVLIGGLVVAMYLPIFKL
GSVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=689581 M5524_RS06865 WP_373990705.1 1582126..1583340(-) (pilC) [Duganella sp. BuS-21]
ATGGCAACATCGGGCAATCAGGTCAAGGAATCGGTCTTCGCCTGGGAGGGCAAGGATAAAACCGGCAAGACCGTGCGCGG
CGAGCTGCGCGCCGGCGGCGAGGCCGTGGTCAACGTCACCCTGCGCCGCCAGGGCATCATGGTCACCAAGGTCAAGAAGA
AAGCCTACCGCTCGGGCAAGAAAGTGTCCGACAAGGACATCACGCTGTTCACCCGCCAGCTGGCCACCATGATGAAGGCC
GGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGCCACGCCAATCCGTCCGTCTCCAAGCTGGTGATGGACCT
GCGCGCCGATATCGAAACCGGCACCAGCCTGAACCAGGCGTTCCGCAAGTTCCCGCTCTACTTCGACCCGCTGTTCTGCA
ACCTGGTGGGCGCCGGCGAACAGGCCGGCATCCTCGAAGACTTGCTGACGCGGCTGGCCATCTACAAGGAAAAAACGCAG
GCCATGAAGGCCAAAATCAAGTCGGCGCTGATGTATCCGGTGTCGATCCTGGCGGTGGCGTTCCTGGTCACGGCGGTGAT
CATGATCTGGGTGGTGCCGGCCTTCAAGGAGGTGTTCACCAGCTTTGGCGCCAACCTGCCGGCGCCGACCCTGTTCGTGA
TGGCGGTGTCGGAATTCTTTGTGACGTGGTGGTGGCTGATATTCGGCGGACTGTTTGCGGCCATCTACTTCTTCTTCCGG
GCCTGGCAGCGCTCCTTGCAGATGCAGCGCTTCATGGACAAGCTGCTGCTGCGCTTGCCGATCTTCGGCGACGTGATCCG
CAAGGCCACGGTGGCGCGCTGGACCCGCACCCTGTCGACCATGTTCGCGGCCGGCGTGCCGCTGGTGGAGTCGCTCGATT
CAGTGGGCGGCGCCGCCGGCAACGCCGTCTACCTCGACGCCACGCGCAAGATCCAGACCGAAGTCAGCACCGGCACCAGC
CTGACGGTGGCGATGCAGAACGCCGACGTCTTCCCCAATATGGTGACACAGATGGTCTCCATCGGCGAAGAATCCGGCTC
GCTGGACGCCATGCTGGCCAAGGTGGCCGACTTCTACGAAGAGGAAGTCGACGACGCCGTGGCCTCGCTGTCGAGCCTGA
TGGAGCCGGCCATCATGGTCATCCTGGGCGTGCTGATCGGCGGCCTGGTGGTGGCCATGTACCTGCCGATCTTCAAGCTC
GGTTCGGTGGTCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.5

99.01

0.54
  pilG Neisseria gonorrhoeae MS11

53.904

98.267

0.53
  pilG Neisseria meningitidis 44/76-A

53.652

98.267

0.527
  pilC Acinetobacter baylyi ADP1

51.589

100

0.522
  pilC Legionella pneumophila strain ERS1305867

52.778

98.02

0.517
  pilC Acinetobacter baumannii D1279779

51.385

98.267

0.505
  pilC Vibrio campbellii strain DS40M4

39.364

100

0.399
  pilC Vibrio cholerae strain A1552

40.302

98.267

0.396
  pilC Thermus thermophilus HB27

37.343

98.762

0.369