Detailed information NTG0689580

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M5524_RS06845
• Genome accession: NZ_CP097466
• Coordinates: 1578861..1579733 (-)
• Length: 290 a.a.
• NCBI ID: WP_373990701.1
• Uniprot ID: -
• Organism: Duganella sp. BuS-21
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1573861..1584733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5524_RS06805 (M5524_06780)	-	1573969..1574850 (+)	882	WP_373990693.1	ATP-binding protein	-
M5524_RS06810 (M5524_06785)	-	1574847..1575245 (+)	399	WP_373990694.1	NUDIX domain-containing protein	-
M5524_RS06815 (M5524_06790)	-	1575350..1575895 (+)	546	WP_373990695.1	DUF3455 domain-containing protein	-
M5524_RS06820 (M5524_06795)	-	1575915..1576469 (+)	555	WP_373990696.1	sigma-70 family RNA polymerase sigma factor	-
M5524_RS06825 (M5524_06800)	-	1576466..1577182 (+)	717	WP_373990697.1	anti-sigma factor domain-containing protein	-
M5524_RS06830 (M5524_06805)	yacG	1577202..1577375 (-)	174	WP_373990698.1	DNA gyrase inhibitor YacG	-
M5524_RS06835 (M5524_06810)	zapD	1577385..1578140 (-)	756	WP_373990699.1	cell division protein ZapD	-
M5524_RS06840 (M5524_06815)	coaE	1578247..1578864 (-)	618	WP_373990700.1	dephospho-CoA kinase	-
M5524_RS06845 (M5524_06820)	pilD	1578861..1579733 (-)	873	WP_373990701.1	A24 family peptidase	Machinery gene
M5524_RS06850 (M5524_06825)	-	1579889..1580677 (+)	789	WP_373990702.1	sensor histidine kinase	-
M5524_RS06855 (M5524_06830)	-	1580674..1581327 (-)	654	WP_373990703.1	response regulator	-
M5524_RS06860 (M5524_06835)	-	1581490..1582122 (+)	633	WP_373990704.1	cysteine hydrolase family protein	-
M5524_RS06865 (M5524_06840)	pilC	1582126..1583340 (-)	1215	WP_373990705.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31003.75 Da
• Isoelectric Point: 8.0301

>NTDB_id=689580 M5524_RS06845 WP_373990701.1 1578861..1579733(-) (pilD) [Duganella sp. BuS-21]
MLQSTLLFAPAGDLAISLIAGLFGLLFGSFLNVVIHRLPIMMQRESDNYVAAESGKPAPHTERYNLVVPRSACPHCQHQI
TAAENIPVLSWLVLRGKCSNCKAPISPRYPAVELLTGALSVLVVWKLGSGYAGLAGLFFLYALVAMTFIDADTQLLPDDL
TFPLLWAGLLMNVNGTFVPLQDAVIGAAAGYLVLWAIYWLFKLATGKEGMGYGDFKLLAALGAWMGWAMLPTIILLSSVV
GAVVGICLIVYAKRGRNNPIPFGPYLAAAGLIALLYGGPLSAFTNSIVHP

Nucleotide

• Length: 873 bp

>NTDB_id=689580 M5524_RS06845 WP_373990701.1 1578861..1579733(-) (pilD) [Duganella sp. BuS-21]
ATGCTGCAATCGACCCTGTTGTTCGCCCCCGCCGGCGACCTCGCCATCAGCCTGATCGCCGGATTGTTCGGCCTGCTGTT
CGGCAGCTTCCTGAACGTGGTGATCCACCGCCTGCCGATCATGATGCAGCGCGAGTCGGACAACTACGTGGCCGCCGAAA
GCGGCAAGCCGGCGCCGCATACGGAGCGCTACAACCTGGTGGTGCCGCGCTCGGCCTGCCCGCATTGCCAGCACCAGATC
ACGGCGGCGGAAAACATCCCGGTGCTCAGCTGGCTGGTCCTGCGCGGCAAGTGCAGCAACTGCAAGGCACCGATTTCGCC
ACGCTATCCGGCGGTGGAGCTGCTGACCGGCGCGCTATCGGTGCTGGTGGTGTGGAAGCTGGGCAGCGGCTATGCCGGAC
TGGCCGGACTGTTCTTCCTGTACGCACTGGTCGCCATGACCTTCATCGATGCCGACACCCAATTGCTGCCCGACGACCTG
ACCTTCCCACTGCTGTGGGCCGGCCTGCTGATGAACGTGAACGGCACCTTCGTGCCGCTGCAGGATGCGGTGATCGGCGC
GGCCGCCGGCTACCTGGTGCTGTGGGCGATCTACTGGTTGTTCAAGCTCGCCACCGGCAAGGAAGGCATGGGCTATGGCG
ACTTCAAGCTGCTGGCGGCGCTGGGCGCGTGGATGGGCTGGGCCATGCTGCCAACCATCATCCTGCTGTCCTCGGTGGTG
GGCGCGGTGGTCGGCATTTGCCTGATCGTGTACGCCAAGCGCGGCCGCAACAACCCGATTCCCTTCGGCCCCTATCTGGC
GGCGGCCGGCCTGATCGCGCTGCTATACGGTGGCCCGCTGTCGGCCTTCACCAACAGCATCGTCCATCCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.712	91.034	0.534
pilD	Vibrio campbellii strain DS40M4	55.133	90.69	0.5
pilD	Acinetobacter baumannii D1279779	50.943	91.379	0.466
pilD	Acinetobacter nosocomialis M2	49.811	91.379	0.455
pilD	Neisseria gonorrhoeae MS11	50	88.276	0.441