Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PDPUS_RS00455 Genome accession   NZ_AP018045
Coordinates   93464..94552 (+) Length   362 a.a.
NCBI ID   WP_086957404.1    Uniprot ID   A0A1V1V755
Organism   Photobacterium damselae subsp. piscicida strain 91-197     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 88464..99552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDPUS_RS00435 (PDPUS_1_00089) rsmB 89229..90506 (-) 1278 WP_044178802.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PDPUS_RS00440 (PDPUS_1_00090) fmt 90645..91589 (-) 945 WP_086957401.1 methionyl-tRNA formyltransferase -
  PDPUS_RS00445 (PDPUS_1_00091) def 91602..92114 (-) 513 WP_086957402.1 peptide deformylase -
  PDPUS_RS00450 (PDPUS_1_00092) - 92403..93461 (+) 1059 WP_086957403.1 LysM peptidoglycan-binding domain-containing protein -
  PDPUS_RS00455 (PDPUS_1_00093) dprA 93464..94552 (+) 1089 WP_086957404.1 DNA-processing protein DprA Machinery gene
  PDPUS_RS00460 (PDPUS_1_00094) - 94555..95028 (+) 474 WP_044178816.1 DUF494 family protein -
  PDPUS_RS00465 (PDPUS_1_00095) - 95129..95686 (+) 558 WP_044178819.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PDPUS_RS00470 (PDPUS_1_00096) - 95754..96875 (-) 1122 WP_044178823.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PDPUS_RS00475 (PDPUS_1_00097) purE 96878..97363 (-) 486 WP_005302138.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PDPUS_RS00480 (PDPUS_1_00098) - 97557..98114 (+) 558 WP_044178827.1 L-threonylcarbamoyladenylate synthase -
  PDPUS_RS00485 (PDPUS_1_00099) hemF 98118..99029 (+) 912 WP_086957405.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39023.08 Da        Isoelectric Point: 6.5708

>NTDB_id=68796 PDPUS_RS00455 WP_086957404.1 93464..94552(+) (dprA) [Photobacterium damselae subsp. piscicida strain 91-197]
MDNIHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVVAIKHPDNKKIDWALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDGQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAASIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAILGSIYNPASRGCNALIKSGAKLVESAQDIFEEIGALTECAINHQLSQALPETENEQLPFPELLATVGSE
VIPVDVLAERSQMPVHDVMTQLLELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=68796 PDPUS_RS00455 WP_086957404.1 93464..94552(+) (dprA) [Photobacterium damselae subsp. piscicida strain 91-197]
ATGGACAATATCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGCCACCGTATCAGTCGTTTATTACAACA
TGCAATGCCAGAGCAAATAATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTTGTCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTGGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTCTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGTGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTAGGCATCGATGGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACCATTGCCGTTTTAGGTTCTGGGCTGGAGCAGATTTATCCCGCATGCCACAAATCGTTAGCTGCAAG
TATTGTTGAGCAGGGTGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGGGCCCAATTTTTTCCACGTAGAAACC
GGATTATTAGCGGTTTATCTGTTGGAGTATTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAGCAAGGTCGAGAGGTCTTTGCTATACTTGGTTCTATTTATAATCCCGCCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCAAGATATTTTCGAGGAGATAGGAGCCCTAACAGAATGCGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCGAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCATGATGTCATGACGCAATTATTAGAATTGCTCGG
ATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)

DprA winged helix domain (DprA_WH)

(312-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V1V755

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

55.647

100

0.558
  dprA Vibrio cholerae strain A1552

51.058

100

0.533
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.489
  dprA Legionella pneumophila strain ERS1305867

43.396

100

0.445
  dprA Haemophilus influenzae Rd KW20

46.903

93.646

0.439
  dprA Neisseria meningitidis strain C311

43.302

88.674

0.384
  dprA Neisseria meningitidis MC58

43.302

88.674

0.384
  dprA Acinetobacter baumannii strain A118

42.284

89.503

0.378
  dprA Neisseria gonorrhoeae MS11

42.32

88.122

0.373
  dprA Neisseria gonorrhoeae strain FA1090

41.693

88.122

0.367
  dprA Acinetobacter baylyi ADP1

44.186

83.149

0.367

Multiple sequence alignment