Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PALA36_RS00135 Genome accession   NZ_CP110348
Coordinates   29784..30872 (+) Length   362 a.a.
NCBI ID   WP_022580757.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA36     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 24784..35872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA36_RS00115 (PALA36_00023) rsmB 25679..26983 (-) 1305 WP_009316075.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PALA36_RS00120 (PALA36_00024) fmt 26980..27924 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  PALA36_RS00125 (PALA36_00025) def 27979..28485 (-) 507 WP_003097293.1 peptide deformylase -
  PALA36_RS00130 (PALA36_00026) tsaP 28624..29649 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PALA36_RS00135 (PALA36_00027) dprA 29784..30872 (+) 1089 WP_022580757.1 DNA-processing protein DprA Machinery gene
  PALA36_RS00140 (PALA36_00028) - 30913..31470 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PALA36_RS00145 (PALA36_00029) - 31480..32457 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PALA36_RS00150 (PALA36_00030) hemF 32648..33565 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PALA36_RS00155 (PALA36_00031) aroE 33623..34447 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  PALA36_RS00160 (PALA36_00032) - 34558..35544 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37722.24 Da        Isoelectric Point: 7.0288

>NTDB_id=684031 PALA36_RS00135 WP_022580757.1 29784..30872(+) (dprA) [Pseudomonas aeruginosa strain PALA36]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAASEALRWLEGPR
RQLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=684031 PALA36_RS00135 WP_022580757.1 29784..30872(+) (dprA) [Pseudomonas aeruginosa strain PALA36]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGTGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGAGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGT
AGGCAGCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTTGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGAATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTCTCGGAGCTGCCGCTGGACAGTCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCTGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(297-355)

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

42.973

100

0.439
  dprA Legionella pneumophila strain ERS1305867

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.972

98.066

0.412
  dprA Acinetobacter baumannii D1279779

37.293

100

0.373
  dprA Glaesserella parasuis strain SC1401

47.203

79.006

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Acinetobacter baumannii strain A118

37.892

96.961

0.367
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367