Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PALA35_RS00105 Genome accession   NZ_CP110346
Coordinates   22391..23479 (+) Length   362 a.a.
NCBI ID   WP_022580757.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA35     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17391..28479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA35_RS00085 (PALA35_00017) rsmB 18285..19589 (-) 1305 WP_269974628.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PALA35_RS00090 (PALA35_00018) fmt 19586..20530 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  PALA35_RS00095 (PALA35_00019) def 20586..21092 (-) 507 WP_003097293.1 peptide deformylase -
  PALA35_RS00100 (PALA35_00020) tsaP 21231..22256 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PALA35_RS00105 (PALA35_00021) dprA 22391..23479 (+) 1089 WP_022580757.1 DNA-processing protein DprA Machinery gene
  PALA35_RS00110 (PALA35_00022) - 23520..24077 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PALA35_RS00115 (PALA35_00024) - 24087..25066 (-) 980 Protein_22 NADPH:quinone reductase -
  PALA35_RS00120 (PALA35_00025) hemF 25257..26174 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PALA35_RS00125 (PALA35_00026) aroE 26232..27056 (+) 825 WP_003097314.1 shikimate dehydrogenase -
  PALA35_RS00130 (PALA35_00027) - 27167..28153 (+) 987 WP_003097316.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37722.24 Da        Isoelectric Point: 7.0288

>NTDB_id=683829 PALA35_RS00105 WP_022580757.1 22391..23479(+) (dprA) [Pseudomonas aeruginosa strain PALA35]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAASEALRWLEGPR
RQLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=683829 PALA35_RS00105 WP_022580757.1 22391..23479(+) (dprA) [Pseudomonas aeruginosa strain PALA35]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGTGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGAGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCAGCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGAATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATCCCGGGCTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCTGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(297-355)

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

42.781

100

0.442
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

42.781

100

0.442
  dprA Vibrio campbellii strain DS40M4

42.973

100

0.439
  dprA Legionella pneumophila strain ERS1305867

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.972

98.066

0.412
  dprA Acinetobacter baumannii D1279779

37.293

100

0.373
  dprA Glaesserella parasuis strain SC1401

47.203

79.006

0.373
  dprA Neisseria gonorrhoeae strain FA1090

44.224

83.702

0.37
  dprA Acinetobacter baumannii strain A118

37.892

96.961

0.367
  dprA Neisseria gonorrhoeae MS11

43.894

83.702

0.367
  dprA Neisseria meningitidis MC58

45.704

80.387

0.367
  dprA Neisseria meningitidis strain C311

45.704

80.387

0.367