Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M1S30_RS17825 Genome accession   NZ_CP096735
Coordinates   3688431..3689657 (+) Length   408 a.a.
NCBI ID   WP_249374123.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 5683     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3683431..3694657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S30_RS17790 (M1S30_17790) rimP 3684095..3684619 (-) 525 WP_000777730.1 ribosome maturation factor RimP -
  M1S30_RS17810 (M1S30_17810) secG 3685261..3685590 (-) 330 WP_000555572.1 preprotein translocase subunit SecG -
  M1S30_RS17815 (M1S30_17815) tpiA 3685603..3686397 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  M1S30_RS17820 (M1S30_17820) pilB 3686689..3688401 (+) 1713 WP_001274990.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M1S30_RS17825 (M1S30_17825) pilC 3688431..3689657 (+) 1227 WP_249374123.1 type II secretion system F family protein Machinery gene
  M1S30_RS20705 pilD 3689657..3690517 (+) 861 WP_001152285.1 A24 family peptidase Machinery gene
  M1S30_RS17840 (M1S30_17840) coaE 3690519..3691115 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  M1S30_RS17845 (M1S30_17845) - 3691112..3692026 (-) 915 WP_000075011.1 DMT family transporter -
  M1S30_RS17850 (M1S30_17850) rlmB 3692062..3692811 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  M1S30_RS17855 (M1S30_17855) - 3692913..3693239 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  M1S30_RS17860 (M1S30_17860) - 3693316..3694626 (-) 1311 WP_000753294.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44950.46 Da        Isoelectric Point: 9.9566

>NTDB_id=683465 M1S30_RS17825 WP_249374123.1 3688431..3689657(+) (pilC) [Acinetobacter baumannii strain 5683]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNLIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=683465 M1S30_RS17825 WP_249374123.1 3688431..3689657(+) (pilC) [Acinetobacter baumannii strain 5683]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACCTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACAGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCGATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.51

100

0.995
  pilC Acinetobacter baylyi ADP1

86.029

100

0.86
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

47.487

97.549

0.463
  pilG Neisseria gonorrhoeae MS11

47.487

97.549

0.463
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36