Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PALA43_RS05080 Genome accession   NZ_CP109932
Coordinates   1105062..1106150 (+) Length   362 a.a.
NCBI ID   WP_003123764.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA43     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1100062..1111150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA43_RS05060 (PALA43_01002) rsmB 1100957..1102261 (-) 1305 WP_043096358.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PALA43_RS05065 (PALA43_01003) fmt 1102258..1103202 (-) 945 WP_003131369.1 methionyl-tRNA formyltransferase -
  PALA43_RS05070 (PALA43_01004) def 1103257..1103763 (-) 507 WP_003097293.1 peptide deformylase -
  PALA43_RS05075 (PALA43_01005) tsaP 1103902..1104927 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PALA43_RS05080 (PALA43_01006) dprA 1105062..1106150 (+) 1089 WP_003123764.1 DNA-processing protein DprA Machinery gene
  PALA43_RS05085 (PALA43_01007) - 1106191..1106748 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PALA43_RS05090 (PALA43_01008) - 1106758..1107735 (-) 978 WP_003097303.1 NADPH:quinone reductase -
  PALA43_RS05095 (PALA43_01009) hemF 1107927..1108844 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PALA43_RS05100 (PALA43_01010) aroE 1108902..1109726 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  PALA43_RS05105 (PALA43_01011) - 1109837..1110823 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37673.17 Da        Isoelectric Point: 7.0742

>NTDB_id=682056 PALA43_RS05080 WP_003123764.1 1105062..1106150(+) (dprA) [Pseudomonas aeruginosa strain PALA43]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=682056 PALA43_RS05080 WP_003123764.1 1105062..1106150(+) (dprA) [Pseudomonas aeruginosa strain PALA43]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACCCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGTGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Vibrio cholerae strain A1552

43.048

100

0.445
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.048

100

0.445
  dprA Legionella pneumophila strain ERS1305867

43.38

98.066

0.425
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.254

98.066

0.414
  dprA Acinetobacter baumannii D1279779

37.845

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Acinetobacter baumannii strain A118

38.177

96.961

0.37
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37