Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M1F48_RS04490 Genome accession   NZ_CP096532
Coordinates   913356..913784 (+) Length   142 a.a.
NCBI ID   WP_000934783.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RIVM_M083782     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 908356..918784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F48_RS04435 (M1F48_04420) - 908788..909279 (-) 492 WP_001573838.1 hypothetical protein -
  M1F48_RS04440 (M1F48_04425) - 909300..909758 (-) 459 WP_000521395.1 ImmA/IrrE family metallo-endopeptidase -
  M1F48_RS04445 (M1F48_04430) - 909780..910106 (-) 327 WP_000455972.1 helix-turn-helix transcriptional regulator -
  M1F48_RS04450 (M1F48_04435) - 910269..910478 (+) 210 WP_001114715.1 helix-turn-helix transcriptional regulator -
  M1F48_RS04455 (M1F48_04440) - 910517..911242 (+) 726 WP_015978381.1 phage repressor protein -
  M1F48_RS04460 (M1F48_04445) - 911267..911476 (+) 210 WP_000455728.1 hypothetical protein -
  M1F48_RS04465 (M1F48_04450) - 911489..911650 (+) 162 WP_000066011.1 DUF1270 domain-containing protein -
  M1F48_RS04470 (M1F48_04455) - 911742..912002 (+) 261 WP_000291075.1 DUF1108 family protein -
  M1F48_RS04475 (M1F48_04460) - 912010..912246 (+) 237 WP_000802315.1 hypothetical protein -
  M1F48_RS04480 (M1F48_04465) - 912239..912718 (+) 480 WP_000002513.1 siphovirus Gp157 family protein -
  M1F48_RS04485 (M1F48_04470) - 912718..913356 (+) 639 WP_021285877.1 ERF family protein -
  M1F48_RS04490 (M1F48_04475) ssbA 913356..913784 (+) 429 WP_000934783.1 single-stranded DNA-binding protein Machinery gene
  M1F48_RS04495 (M1F48_04480) - 913798..914472 (+) 675 WP_021285876.1 putative HNHc nuclease -
  M1F48_RS04500 (M1F48_04485) - 914465..915220 (+) 756 WP_001037657.1 DnaD domain protein -
  M1F48_RS04505 (M1F48_04490) - 915220..915576 (+) 357 WP_001132243.1 hypothetical protein -
  M1F48_RS04510 (M1F48_04495) - 915573..916814 (+) 1242 WP_001106166.1 DnaB helicase C-terminal domain-containing protein -
  M1F48_RS04515 (M1F48_04500) - 916811..917026 (+) 216 WP_021285875.1 hypothetical protein -
  M1F48_RS04520 (M1F48_04505) - 917029..917250 (+) 222 WP_001123688.1 DUF3269 family protein -
  M1F48_RS04525 (M1F48_04510) - 917260..917667 (+) 408 WP_021285874.1 RusA family crossover junction endodeoxyribonuclease -
  M1F48_RS04530 (M1F48_04515) - 917667..917852 (+) 186 WP_021285873.1 DUF3113 family protein -
  M1F48_RS04535 (M1F48_04520) - 917853..918470 (+) 618 WP_021285872.1 SA1788 family PVL leukocidin-associated protein -
  M1F48_RS04540 (M1F48_04525) - 918470..918724 (+) 255 WP_021285871.1 DUF3310 domain-containing protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16047.61 Da        Isoelectric Point: 5.8724

>NTDB_id=681594 M1F48_RS04490 WP_000934783.1 913356..913784(+) (ssbA) [Staphylococcus aureus strain RIVM_M083782]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAIIDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=681594 M1F48_RS04490 WP_000934783.1 913356..913784(+) (ssbA) [Staphylococcus aureus strain RIVM_M083782]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTATTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

46.957

80.986

0.38
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.099

0.373
  ssbB/cilA Streptococcus mitis SK321

44.915

83.099

0.373