Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M0M42_RS16500 Genome accession   NZ_CP096208
Coordinates   3532638..3533861 (-) Length   407 a.a.
NCBI ID   WP_248493405.1    Uniprot ID   -
Organism   Pseudomonas knackmussii strain B09-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3527638..3538861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M42_RS16470 (M0M42_16470) rplM 3527805..3528233 (-) 429 WP_019342644.1 50S ribosomal protein L13 -
  M0M42_RS16475 (M0M42_16475) - 3528623..3529660 (+) 1038 WP_248493397.1 NADP(H)-dependent aldo-keto reductase -
  M0M42_RS16480 (M0M42_16480) - 3529759..3530451 (+) 693 WP_248493399.1 energy-coupling factor ABC transporter permease -
  M0M42_RS16485 (M0M42_16485) yacG 3530501..3530698 (-) 198 WP_248493401.1 DNA gyrase inhibitor YacG -
  M0M42_RS16490 (M0M42_16490) coaE 3530695..3531303 (-) 609 WP_248497435.1 dephospho-CoA kinase -
  M0M42_RS16495 (M0M42_16495) pilD 3531772..3532635 (-) 864 WP_248493403.1 A24 family peptidase Machinery gene
  M0M42_RS16500 (M0M42_16500) pilC 3532638..3533861 (-) 1224 WP_248493405.1 type II secretion system F family protein Machinery gene
  M0M42_RS16505 (M0M42_16505) pilB 3533864..3535570 (-) 1707 WP_248493407.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M0M42_RS21130 pilA 3536043..3536228 (+) 186 WP_282579612.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  M0M42_RS16515 (M0M42_16515) - 3536241..3536654 (+) 414 WP_248493410.1 hypothetical protein -
  M0M42_RS16520 (M0M42_16520) - 3536724..3537527 (+) 804 WP_248493412.1 ABC transporter permease subunit -
  M0M42_RS16525 (M0M42_16525) - 3537524..3538357 (+) 834 WP_248493414.1 hypothetical protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44293.03 Da        Isoelectric Point: 9.9369

>NTDB_id=680423 M0M42_RS16500 WP_248493405.1 3532638..3533861(-) (pilC) [Pseudomonas knackmussii strain B09-2]
MAQQKALKTSVFTWEGTDRKGSKIKGELSGQSPALIKAQLRKQGINPLKVRKKAVSLFSAGKKIKPMDIALFTRQMATMM
KAGVPLLQSFDIIGEGFDNPSMRKLVDEVKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEK
TEQLKAKIKKAMTYPISVILVAILVSAILLIKVVPQFQDVFAGFGAELPAFTLMVIGLSEALQEWWWLVLLVAGGAAFTF
KAMFKRSERFRNGVDRTMLKVPIVGAILYKSAVARYARTLSTTFAAGVPLVDALNSVSGATGNVVFRNAVDKIRNDVSSG
VQLNFSMRATGVFPSMAVQMTAIGEESGSLDEMLDKVASFYEEEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIF
QLGGVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=680423 M0M42_RS16500 WP_248493405.1 3532638..3533861(-) (pilC) [Pseudomonas knackmussii strain B09-2]
ATGGCGCAGCAGAAAGCGTTGAAAACCAGTGTGTTCACCTGGGAAGGCACTGACCGCAAGGGCAGCAAGATCAAGGGTGA
GCTGTCTGGCCAGAGCCCAGCGCTGATCAAGGCTCAACTCCGCAAGCAGGGCATCAACCCGCTGAAGGTTCGCAAAAAGG
CTGTCTCGCTGTTCAGCGCTGGTAAAAAGATCAAACCCATGGACATCGCGCTGTTCACTCGGCAGATGGCGACCATGATG
AAGGCGGGCGTGCCGCTGCTTCAGTCCTTCGACATCATCGGCGAAGGCTTCGACAACCCCAGTATGCGTAAGCTGGTTGA
CGAAGTTAAGCAGGAGGTAGCGGCGGGCAACAGCTTTGCCGGTTCGCTGCGCAAGAAGCCGCAATACTTCGATGACCTTT
ATTGCAACCTGGTGGAGTCTGGCGAGCAGTCCGGTGCGCTGGAGACCTTGCTCGATAGGGTTGCGACATATAAGGAAAAG
ACCGAACAACTCAAAGCAAAAATCAAAAAGGCAATGACCTATCCGATTTCGGTCATTCTGGTTGCGATTTTGGTTTCTGC
GATATTGCTAATCAAAGTCGTACCGCAGTTTCAGGATGTGTTTGCTGGTTTTGGGGCAGAGCTTCCTGCTTTTACGCTCA
TGGTGATTGGGTTGTCAGAAGCGTTGCAGGAATGGTGGTGGTTGGTTTTGTTGGTTGCTGGCGGGGCAGCTTTCACATTC
AAAGCAATGTTCAAACGCTCTGAGCGTTTTCGTAACGGTGTTGACCGAACAATGCTCAAAGTCCCGATTGTTGGGGCTAT
TTTGTATAAATCTGCGGTGGCCCGCTACGCTCGGACATTATCGACAACCTTCGCCGCGGGTGTCCCGCTGGTGGATGCAT
TGAATTCAGTGTCCGGCGCTACCGGCAACGTGGTGTTCAGAAATGCGGTCGATAAGATCCGTAATGATGTGTCGTCTGGA
GTTCAGCTGAACTTTTCGATGCGTGCAACCGGCGTTTTTCCTTCAATGGCTGTGCAGATGACCGCAATCGGCGAAGAGTC
CGGCTCGTTGGATGAGATGCTGGACAAAGTTGCCAGTTTCTACGAGGAAGAGGTCGACAATATGGTCGATAATCTCACTA
CCTTGATGGAGCCGATGATCATGGCGGTTTTGGGCGTTTTGGTCGGCGGATTGATCATCGCGATGTACTTACCAATCTTC
CAGCTTGGTGGCGTTGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

84.367

99.017

0.835
  pilC Acinetobacter baylyi ADP1

61.029

100

0.612
  pilC Acinetobacter baumannii D1279779

60.049

100

0.602
  pilC Legionella pneumophila strain ERS1305867

53.03

97.297

0.516
  pilG Neisseria gonorrhoeae MS11

45.025

98.771

0.445
  pilG Neisseria meningitidis 44/76-A

44.913

99.017

0.445
  pilC Vibrio cholerae strain A1552

41.422

100

0.415
  pilC Vibrio campbellii strain DS40M4

41.814

97.543

0.408