Detailed information NTG0680422

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M0M42_RS16495
• Genome accession: NZ_CP096208
• Coordinates: 3531772..3532635 (-)
• Length: 287 a.a.
• NCBI ID: WP_248493403.1
• Uniprot ID: -
• Organism: Pseudomonas knackmussii strain B09-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3526772..3537635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0M42_RS16465 (M0M42_16465)	rpsI	3527398..3527790 (-)	393	WP_131649936.1	30S ribosomal protein S9	-
M0M42_RS16470 (M0M42_16470)	rplM	3527805..3528233 (-)	429	WP_019342644.1	50S ribosomal protein L13	-
M0M42_RS16475 (M0M42_16475)	-	3528623..3529660 (+)	1038	WP_248493397.1	NADP(H)-dependent aldo-keto reductase	-
M0M42_RS16480 (M0M42_16480)	-	3529759..3530451 (+)	693	WP_248493399.1	energy-coupling factor ABC transporter permease	-
M0M42_RS16485 (M0M42_16485)	yacG	3530501..3530698 (-)	198	WP_248493401.1	DNA gyrase inhibitor YacG	-
M0M42_RS16490 (M0M42_16490)	coaE	3530695..3531303 (-)	609	WP_248497435.1	dephospho-CoA kinase	-
M0M42_RS16495 (M0M42_16495)	pilD	3531772..3532635 (-)	864	WP_248493403.1	A24 family peptidase	Machinery gene
M0M42_RS16500 (M0M42_16500)	pilC	3532638..3533861 (-)	1224	WP_248493405.1	type II secretion system F family protein	Machinery gene
M0M42_RS16505 (M0M42_16505)	pilB	3533864..3535570 (-)	1707	WP_248493407.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M0M42_RS21130	pilA	3536043..3536228 (+)	186	WP_282579612.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
M0M42_RS16515 (M0M42_16515)	-	3536241..3536654 (+)	414	WP_248493410.1	hypothetical protein	-
M0M42_RS16520 (M0M42_16520)	-	3536724..3537527 (+)	804	WP_248493412.1	ABC transporter permease subunit	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 31679.63 Da
• Isoelectric Point: 7.3644

>NTDB_id=680422 M0M42_RS16495 WP_248493403.1 3531772..3532635(-) (pilD) [Pseudomonas knackmussii strain B09-2]
MIIQLLASNTLAFVSCALVLGLLVGSFLNVAIHRLPIMMRRDWRAQAREFLELPAEPAATFNLVLPHSHCPHCDHEIRPW
ENIPLVSWLALRGKCSSCRASISSRYPLVELLCGLLSAYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSIVLP
LLWLGLIVNYFGLFAPLPDAVWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGAV
LGTIMLRVQKADSGTAIPFGPYLAIAGWIALLWGDQITSSYLQFARL

Nucleotide

• Length: 864 bp

>NTDB_id=680422 M0M42_RS16495 WP_248493403.1 3531772..3532635(-) (pilD) [Pseudomonas knackmussii strain B09-2]
ATGATCATCCAGCTCCTGGCCAGCAACACGCTGGCCTTTGTTTCATGCGCGCTGGTGCTGGGCCTGCTGGTGGGCAGTTT
TCTCAACGTGGCGATCCATCGCCTGCCGATCATGATGCGGCGAGACTGGCGCGCGCAGGCGCGTGAGTTTCTCGAGCTGC
CGGCGGAGCCTGCTGCGACATTCAATCTCGTCCTTCCCCATTCACATTGCCCGCACTGCGATCATGAGATTCGCCCATGG
GAAAATATTCCGCTGGTGAGCTGGCTGGCTTTGCGTGGCAAGTGTTCGTCTTGCCGAGCATCGATCAGTAGTCGTTATCC
CTTGGTCGAGCTGCTGTGCGGGTTGTTGTCCGCCTATGTCGCCTGGCACTTTGGCTTTTCCTGGCAGGCCGGTGCGATGC
TGCTGCTGACCTGGGGTTTGCTGGCGATGAGCATGATCGACGTCGATCATCAACTGCTGCCTGACTCGATCGTGTTGCCG
TTGCTCTGGCTGGGGTTGATTGTCAATTACTTCGGGTTGTTTGCGCCGTTACCTGATGCGGTATGGGGTGCGATTGCGGG
TTATCTCAGTCTGTGGTCGGTGTACTGGCTGTTCAAGCTTGTGACCGGCAAGGAGGGCATGGGCTATGGCGATTTCAAGC
TGCTGGCGATGCTTGGGGCCTGGGGCGGCTGGCAGGTTCTGCCGCTGACCATTCTATTGTCCTCCGTTGTGGGTGCGGTG
TTGGGCACCATCATGCTGCGTGTGCAGAAGGCCGATAGCGGCACGGCCATTCCCTTCGGCCCCTACCTGGCGATTGCCGG
CTGGATCGCCCTGCTTTGGGGTGACCAGATCACCTCAAGCTATCTTCAATTCGCCAGGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-124)

• Type IV leader peptidase family (Peptidase_A24) (135-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	58.759	95.47	0.561
pilD	Vibrio campbellii strain DS40M4	55.311	95.122	0.526
pilD	Neisseria gonorrhoeae MS11	53.383	92.683	0.495
pilD	Acinetobacter nosocomialis M2	49.823	98.606	0.491
pilD	Acinetobacter baumannii D1279779	49.47	98.606	0.488