Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OBG92_RS00110 Genome accession   NZ_CP109657
Coordinates   22749..23837 (+) Length   362 a.a.
NCBI ID   WP_053813155.1    Uniprot ID   A0A2R3IYL8
Organism   Pseudomonas aeruginosa strain Zw26     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17749..28837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS00090 (OBG92_00017) rsmB 18646..19950 (-) 1305 WP_058145784.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OBG92_RS00095 (OBG92_00018) fmt 19947..20891 (-) 945 WP_043099675.1 methionyl-tRNA formyltransferase -
  OBG92_RS00100 (OBG92_00019) def 20944..21450 (-) 507 WP_011979050.1 peptide deformylase -
  OBG92_RS00105 (OBG92_00020) tsaP 21589..22614 (+) 1026 WP_043099678.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OBG92_RS00110 (OBG92_00021) dprA 22749..23837 (+) 1089 WP_053813155.1 DNA-processing protein DprA Machinery gene
  OBG92_RS00115 (OBG92_00022) - 23877..24434 (+) 558 WP_011979053.1 L-threonylcarbamoyladenylate synthase -
  OBG92_RS00120 (OBG92_00023) - 24445..25422 (-) 978 WP_058145785.1 quinone oxidoreductase family protein -
  OBG92_RS00125 (OBG92_00024) hemF 25614..26531 (+) 918 WP_011979055.1 oxygen-dependent coproporphyrinogen oxidase -
  OBG92_RS00130 (OBG92_00025) aroE 26589..27413 (+) 825 WP_058145786.1 shikimate dehydrogenase -
  OBG92_RS00135 (OBG92_00026) - 27525..28511 (+) 987 WP_011979056.1 phospholipase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37633.18 Da        Isoelectric Point: 7.0223

>NTDB_id=679648 OBG92_RS00110 WP_053813155.1 22749..23837(+) (dprA) [Pseudomonas aeruginosa strain Zw26]
MNNLSPAELDARLRLHGLPELGPIRFLRLIEAFGSASSALAAPAGAWRTLGLPAEAAAARRSAEVRERAADALRWLEAPR
RHLLMWDDPAYPALLGEVSDAPPLLFVEGAPTALERPQLAMVGSRRASPAGLGSARSFARSLARGGFAITSGLALGIDGA
AHEGALEVGGVTLAVLGTGLRTLYPRRHAALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVEHVLEALRGWTQAGPAEAPVASLAHPLLELLRAAP
CSSEGLAAASGWALPEVLAALTELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=679648 OBG92_RS00110 WP_053813155.1 22749..23837(+) (dprA) [Pseudomonas aeruginosa strain Zw26]
ATGAACAACCTTTCCCCCGCCGAGCTGGACGCCCGGCTGCGCCTGCATGGCCTGCCCGAACTGGGGCCGATCCGCTTCCT
GCGCCTGATCGAGGCCTTCGGCTCGGCCTCCTCCGCCCTCGCCGCGCCGGCTGGCGCCTGGCGCACCCTGGGGCTGCCCG
CCGAGGCCGCCGCTGCCAGGCGCAGCGCCGAGGTGCGCGAGCGGGCGGCGGATGCCCTGCGCTGGCTCGAAGCGCCGCGC
CGGCACCTCCTGATGTGGGATGACCCGGCCTACCCCGCGCTGCTCGGCGAGGTGAGCGACGCCCCGCCGCTGCTGTTCGT
CGAAGGCGCACCGACGGCGCTCGAAAGGCCGCAGCTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGCCTGGGCA
GCGCACGGAGTTTCGCGCGCAGCCTGGCACGAGGCGGCTTCGCCATCACCAGCGGACTGGCGCTGGGCATCGACGGCGCC
GCCCATGAAGGCGCGCTGGAGGTCGGCGGCGTGACCCTGGCGGTGCTCGGCACCGGCCTGCGCACCCTCTATCCGCGTCG
CCATGCGGCGCTGGCGCGGCGCATCGTCGAGGGCGGCGGCGCGCTGGTCTCGGAGTTGCCGCTGGACAGTCCGCCGCTAC
CCGCCAACTTTCCCCGGCGCAACCGGATCATCAGCGGCCTCTCGCTGGGCGTGCTGGTGGTCGAGGCGAGCCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGCCGCGAGGTCTATGCCATCCCCGGTTCGATCCACCATCCGGG
CGCGCGTGGCTGCCATCAGCTGATCCGCGACGGCGCGCTGCTGGTGGAAAGCGTCGAGCACGTCCTGGAGGCCTTGCGCG
GCTGGACGCAGGCGGGGCCAGCGGAGGCGCCTGTAGCGTCGCTGGCCCATCCCTTGCTGGAGTTGCTGCGCGCCGCGCCA
TGCAGCAGCGAAGGCCTGGCCGCCGCCAGCGGCTGGGCGCTGCCCGAGGTGCTGGCGGCGCTCACCGAGCTGGAGCTGGA
CGGGCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(298-355)

DNA recombination-mediator protein A (DNA_processg_A)

(80-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IYL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

44.384

100

0.448
  dprA Legionella pneumophila strain ERS1305867

44.475

100

0.445
  dprA Acinetobacter baylyi ADP1

43.099

98.066

0.423
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.69

98.066

0.409
  dprA Acinetobacter baumannii strain A118

39.377

97.514

0.384
  dprA Acinetobacter baumannii D1279779

39.377

97.514

0.384
  dprA Neisseria meningitidis MC58

45.302

82.32

0.373
  dprA Neisseria meningitidis strain C311

45.302

82.32

0.373
  dprA Haemophilus influenzae Rd KW20

44.667

82.873

0.37
  dprA Neisseria gonorrhoeae MS11

44.631

82.32

0.367
  dprA Neisseria gonorrhoeae strain FA1090

44.631

82.32

0.367