Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   OBG92_RS00105 Genome accession   NZ_CP109657
Coordinates   21589..22614 (+) Length   341 a.a.
NCBI ID   WP_043099678.1    Uniprot ID   A0A2R3IX49
Organism   Pseudomonas aeruginosa strain Zw26     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16589..27614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS00085 (OBG92_00016) trkA 17245..18618 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  OBG92_RS00090 (OBG92_00017) rsmB 18646..19950 (-) 1305 WP_058145784.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OBG92_RS00095 (OBG92_00018) fmt 19947..20891 (-) 945 WP_043099675.1 methionyl-tRNA formyltransferase -
  OBG92_RS00100 (OBG92_00019) def 20944..21450 (-) 507 WP_011979050.1 peptide deformylase -
  OBG92_RS00105 (OBG92_00020) tsaP 21589..22614 (+) 1026 WP_043099678.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  OBG92_RS00110 (OBG92_00021) dprA 22749..23837 (+) 1089 WP_053813155.1 DNA-processing protein DprA Machinery gene
  OBG92_RS00115 (OBG92_00022) - 23877..24434 (+) 558 WP_011979053.1 L-threonylcarbamoyladenylate synthase -
  OBG92_RS00120 (OBG92_00023) - 24445..25422 (-) 978 WP_058145785.1 quinone oxidoreductase family protein -
  OBG92_RS00125 (OBG92_00024) hemF 25614..26531 (+) 918 WP_011979055.1 oxygen-dependent coproporphyrinogen oxidase -
  OBG92_RS00130 (OBG92_00025) aroE 26589..27413 (+) 825 WP_058145786.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37554.95 Da        Isoelectric Point: 9.3439

>NTDB_id=679647 OBG92_RS00105 WP_043099678.1 21589..22614(+) (tsaP) [Pseudomonas aeruginosa strain Zw26]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPQLWHANPQIQNPHLIYPGDTLSLVYI
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTAAPYIVAGNAERIVSGTGDRVYA
RGKFADGQPAYGIFRQGKVYVDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYQKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=679647 OBG92_RS00105 WP_043099678.1 21589..22614(+) (tsaP) [Pseudomonas aeruginosa strain Zw26]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCGTGGAAGTGGC
CGCAGCTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACATC
GATGGCCAGCCGCGCCTGGTGCTGAACCGCGGCGAGTCGCGCGGCACCATCAAGCTTTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCGATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAATCGCATCGTCGATGACGAGA
AGACCTTCACCGCTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGTACCGGCGACCGCGTCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCAGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACGTCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAGGGCGACGTCGCCACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAACTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAGATCATCGACGTGCCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGCCTCGCCGAAGGCAACGTGCTGGCCATCTACAAGGTCGGCGAGACGGTGCGCG
ATCGCGTCACCGGGGAGTCGGTGAAGATCCCCGACGAGCGCGCCGGCCTGCTGATGGTGTTCCGCACCTACCAGAAGCTG
AGCTACGCCCTGGTGCTGATGGCCAGCAGGCCCCTCTCGGTCACCGACAGGGTGCAGAACCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IX49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

35.967

100

0.387