Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M0D44_RS16645 Genome accession   NZ_CP096138
Coordinates   3906762..3908021 (-) Length   419 a.a.
NCBI ID   WP_223646360.1    Uniprot ID   -
Organism   Xanthomonas prunicola strain MAI5084     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3908376..3917388 3906762..3908021 flank 355


Gene organization within MGE regions


Location: 3906762..3917388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D44_RS16645 (M0D44_16625) pilC 3906762..3908021 (-) 1260 WP_223646360.1 type II secretion system F family protein Machinery gene
  M0D44_RS16650 (M0D44_16630) - 3908376..3908816 (+) 441 WP_260812216.1 pilin -
  M0D44_RS16660 (M0D44_16640) pilA 3908936..3909382 (+) 447 WP_274704645.1 pilin Machinery gene
  M0D44_RS16665 (M0D44_16645) pilB 3909476..3911215 (+) 1740 WP_260812217.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M0D44_RS16670 (M0D44_16650) pilR 3911749..3913203 (-) 1455 WP_207759566.1 sigma-54 dependent transcriptional regulator Regulator
  M0D44_RS16675 (M0D44_16655) - 3913474..3915087 (-) 1614 WP_101361866.1 HAMP domain-containing sensor histidine kinase -
  M0D44_RS16680 (M0D44_16660) sucC 3915319..3916488 (+) 1170 WP_101361865.1 ADP-forming succinate--CoA ligase subunit beta -
  M0D44_RS16685 (M0D44_16665) sucD 3916513..3917388 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45856.24 Da        Isoelectric Point: 10.2697

>NTDB_id=679604 M0D44_RS16645 WP_223646360.1 3906762..3908021(-) (pilC) [Xanthomonas prunicola strain MAI5084]
MSVTRSTLKKQPIDRSTSQMQAFVWEGTDKRGVKMKGEQVARNANMLRAELRRQGITPNVVKTKPKPLFGAAGKKVTPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKQMVGQVRSDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTIATYKENMEALKGKIKKALFYPAAVLAVALIVTAILLIFVVPQFEQVFSGFGAELPAFTKMIVAASRFMVSYWWL
ILFITLALGFGFLFAYKRSPSMQHGMDRLVLRLPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNAVYGE
AILRMRDDVSVGYPINMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVIG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=679604 M0D44_RS16645 WP_223646360.1 3906762..3908021(-) (pilC) [Xanthomonas prunicola strain MAI5084]
ATGTCAGTCACACGTAGCACCTTAAAGAAGCAACCAATCGATCGCTCCACAAGTCAAATGCAGGCTTTTGTTTGGGAGGG
GACAGACAAACGCGGCGTGAAGATGAAAGGTGAGCAAGTCGCGCGTAACGCCAACATGTTACGTGCGGAATTGCGCAGGC
AGGGGATAACGCCCAATGTTGTGAAGACCAAGCCTAAACCCTTGTTCGGGGCAGCAGGCAAAAAAGTCACGCCTAAAGAT
ATAGCATTTTTCAGCCGCCAAATGGCGACGATGATGAAATCTGGAGTACCCATTGTAGGCTCGCTAGAGATCATTGGCGA
GGGACACAAAAACCCTCGCATGAAACAAATGGTTGGGCAAGTACGGAGCGATATTGAAGGCGGGTCGTCTTTATATGAAT
CCATCAGTAAGCATCCTGTCCAATTCGATGAACTTTATCGCAACCTGGTACGCGCAGGGGAAGGTGCTGGCGTATTGGAA
ACAGTGCTCGATACGATCGCAACCTATAAAGAAAATATGGAGGCACTTAAAGGAAAGATAAAGAAAGCATTATTTTATCC
GGCTGCAGTATTAGCTGTGGCATTGATTGTAACGGCGATCCTACTAATATTTGTTGTACCTCAATTCGAACAGGTTTTTA
GCGGATTTGGCGCCGAACTCCCGGCATTCACCAAGATGATCGTTGCTGCATCACGCTTCATGGTCTCCTATTGGTGGCTA
ATCTTATTCATCACACTAGCCCTAGGTTTTGGCTTCCTTTTTGCCTACAAACGTTCGCCAAGTATGCAACACGGTATGGA
TCGCCTAGTGCTTAGATTGCCGGTAATTGGGCAGATAATGCACAATAGCGCAATTGCTCGTTTCTCGAGGACTACAGCCG
TCACTTTCAAGGCCGGCGTACCATTAGTAGAGGCTTTAGGAATTGTCGCTGGAGCGACCGGTAATGCAGTGTATGGAGAG
GCAATACTTCGTATGCGAGATGATGTCTCTGTTGGCTACCCTATCAATATGGCAATGAAACAAGTCAATCTGTTCCCGCA
TATGGTGATTCAGATGACTGCAATCGGAGAGGAAGCGGGAGCATTGGATGCAATGTTATTTAAGGTAGCTGAATATTTTG
AGCAAGAAGTTAACAATGCGGTCGATGCACTGAGCAGCTTGTTAGAGCCAATGATCATGGTGTTCATTGGTACTATCGTA
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGGCGCAGTCATTGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.724

96.897

0.501
  pilC Pseudomonas stutzeri DSM 10701

52.525

94.511

0.496
  pilC Acinetobacter baylyi ADP1

50.617

96.659

0.489
  pilC Acinetobacter baumannii D1279779

49.136

96.659

0.475
  pilG Neisseria gonorrhoeae MS11

44.059

96.42

0.425
  pilG Neisseria meningitidis 44/76-A

43.564

96.42

0.42
  pilC Vibrio cholerae strain A1552

39.702

96.181

0.382
  pilC Vibrio campbellii strain DS40M4

39.651

95.704

0.379