Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M0D44_RS16670 Genome accession   NZ_CP096138
Coordinates   3911749..3913203 (-) Length   484 a.a.
NCBI ID   WP_207759566.1    Uniprot ID   -
Organism   Xanthomonas prunicola strain MAI5084     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3908376..3917388 3911749..3913203 within 0


Gene organization within MGE regions


Location: 3908376..3917388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D44_RS16650 (M0D44_16630) - 3908376..3908816 (+) 441 WP_260812216.1 pilin -
  M0D44_RS16660 (M0D44_16640) pilA 3908936..3909382 (+) 447 WP_274704645.1 pilin Machinery gene
  M0D44_RS16665 (M0D44_16645) pilB 3909476..3911215 (+) 1740 WP_260812217.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M0D44_RS16670 (M0D44_16650) pilR 3911749..3913203 (-) 1455 WP_207759566.1 sigma-54 dependent transcriptional regulator Regulator
  M0D44_RS16675 (M0D44_16655) - 3913474..3915087 (-) 1614 WP_101361866.1 HAMP domain-containing sensor histidine kinase -
  M0D44_RS16680 (M0D44_16660) sucC 3915319..3916488 (+) 1170 WP_101361865.1 ADP-forming succinate--CoA ligase subunit beta -
  M0D44_RS16685 (M0D44_16665) sucD 3916513..3917388 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52441.16 Da        Isoelectric Point: 6.7822

>NTDB_id=679607 M0D44_RS16670 WP_207759566.1 3911749..3913203(-) (pilR) [Xanthomonas prunicola strain MAI5084]
MSRDPVDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPAPPPEQASR
LLGDSGAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHGHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=679607 M0D44_RS16670 WP_207759566.1 3911749..3913203(-) (pilR) [Xanthomonas prunicola strain MAI5084]
TTGAGCCGCGACCCGGTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGGCTGCGCATCAGCACCG
CCGCCAATCTGGCCGAAGCCCGCGAATTGCTGGCGAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAC
GGCAATGGCATCGAACTGGTCACCGAAATCGCCAGACAGTACCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCAGTGGAAGCATTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCCGCGCCACCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCGGCGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTTTACAT
CGTCGGTGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAGCAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAGAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTATTCCAGGCCGCACACGGCGGCACGTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGCCCGGTTGGCGCCTCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCACCGCTGCGCGAACGCGGCGGCGACTTGCCGCAACTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACGGTCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCTGCCCACGGCGGGCACCGCCTCGCCGCCACGCCCGGCAGCGCCGCCGTCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAG
TTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.696

95.041

0.605
  pilR Acinetobacter baumannii strain A118

48.922

95.868

0.469