Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   OKF33_RS02950 Genome accession   NZ_CP109654
Coordinates   576800..577180 (+) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain 10-02932     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 571800..582180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKF33_RS02930 - 571909..573843 (-) 1935 WP_264306119.1 ribonuclease R family protein -
  OKF33_RS02935 ilvC 573966..574988 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  OKF33_RS02940 - 574991..576043 (+) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  OKF33_RS02945 dprA 576033..576803 (+) 771 WP_002810979.1 DNA-processing protein DprA Machinery gene
  OKF33_RS02950 dprB 576800..577180 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  OKF33_RS02955 - 577191..578045 (+) 855 WP_404843017.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  OKF33_RS02960 msrA 578268..578768 (-) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  OKF33_RS02965 ppa 578816..579334 (-) 519 WP_002776378.1 inorganic diphosphatase -
  OKF33_RS02970 - 579344..579919 (-) 576 WP_002781658.1 adenylate kinase -
  OKF33_RS02975 aspS 579916..581667 (-) 1752 WP_264306121.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=679607 OKF33_RS02950 WP_002776373.1 576800..577180(+) (dprB) [Campylobacter coli strain 10-02932]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=679607 OKF33_RS02950 WP_002776373.1 576800..577180(+) (dprB) [Campylobacter coli strain 10-02932]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421