Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MZO21_RS11245 Genome accession   NZ_CP096120
Coordinates   2258632..2259858 (+) Length   408 a.a.
NCBI ID   WP_248103368.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2253632..2264858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS11200 (MZO21_11195) rimP 2254025..2254549 (-) 525 WP_154772011.1 ribosome maturation factor RimP -
  MZO21_RS11230 (MZO21_11225) secG 2255477..2255806 (-) 330 WP_154772010.1 preprotein translocase subunit SecG -
  MZO21_RS11235 (MZO21_11230) tpiA 2255820..2256611 (-) 792 WP_154772009.1 triose-phosphate isomerase -
  MZO21_RS11240 (MZO21_11235) pilB 2256890..2258602 (+) 1713 WP_154772008.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MZO21_RS11245 (MZO21_11240) pilC 2258632..2259858 (+) 1227 WP_248103368.1 type II secretion system F family protein Machinery gene
  MZO21_RS15125 pilD 2259858..2260724 (+) 867 WP_282441558.1 A24 family peptidase Machinery gene
  MZO21_RS11260 (MZO21_11255) coaE 2260727..2261332 (+) 606 WP_248103370.1 dephospho-CoA kinase -
  MZO21_RS11265 (MZO21_11260) - 2261329..2262249 (-) 921 WP_248103375.1 DMT family transporter -
  MZO21_RS11270 (MZO21_11265) rlmB 2262269..2263018 (-) 750 WP_248103377.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MZO21_RS11275 (MZO21_11270) - 2263151..2263474 (-) 324 WP_154772002.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44932.42 Da        Isoelectric Point: 9.6918

>NTDB_id=679578 MZO21_RS11245 WP_248103368.1 2258632..2259858(+) (pilC) [Acinetobacter portensis strain JNE5]
MAVKKAQMMPIFIYEGVDRKGAKLKGEIPARNMALAKVTLRKQGITIKSIREKKKNILESVFKKKVTTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLDNPAMREVVLGIKGEVEGGNTFAGALKKYPQYFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPLTVVVVAFVVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSEWMQSYWYILIIGIAATVI
GLTEAKKRSKKFRDLLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVS
TGQQLQFAMRATNVFPSMAIQMVAIGEESGALDSMLEKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=679578 MZO21_RS11245 WP_248103368.1 2258632..2259858(+) (pilC) [Acinetobacter portensis strain JNE5]
ATGGCTGTCAAAAAAGCACAGATGATGCCCATCTTCATATATGAAGGAGTTGACCGCAAAGGGGCTAAACTTAAAGGGGA
AATTCCAGCTCGCAATATGGCTTTAGCTAAAGTCACCCTGCGAAAACAAGGAATTACGATTAAATCCATTCGAGAAAAGA
AAAAGAATATTCTCGAAAGTGTCTTTAAAAAGAAAGTAACAACATTAGATATTACGATCTTCACTCGCCAACTTGCTACC
ATGATGAAAGCAGGTGTTCCTTTAGTTCAAAGTTTTGAAATTGTTGCTGAGGGCTTAGATAACCCTGCTATGCGCGAAGT
CGTATTGGGTATTAAAGGTGAAGTTGAAGGTGGTAATACTTTTGCTGGCGCACTTAAAAAATATCCTCAATATTTTGATA
AACTTTTTTGCTCACTTGTTGAATCGGGCGAACAATCTGGTGCGCTTGAAACCATGCTAGACCGTGTAGCTATATACAAA
GAGAAAAGTGAGCTTTTAAAACAAAAAATTAAGAAAGCTATGAAGTATCCGCTCACAGTTGTAGTCGTTGCTTTTGTAGT
TACCATTATTTTGATGGTTAAAGTTGTACCTGTTTTTGAAGAACTATTTACATCTTTTGGTGCAGATTTACCTGCATTTA
CCAAAATGGTAGTAAACATGTCTGAATGGATGCAAAGCTATTGGTACATTTTAATTATTGGTATCGCTGCTACTGTAATT
GGATTAACTGAGGCGAAAAAACGCAGTAAAAAATTCCGAGATCTTTTAGACAAAATGGCATTAAAAGCCCCAATTTTTGG
TGATCTTGTTTATAAAGCAATTATTGCACGTTACAGCCGTACACTTGCAACAACCTTTGCCGCAGGTGTACCTCTGATTG
ATGCATTGGAATCGACAGCGGGTGCAACAAACAACGTTGTGTATGAAGAAGCTGTAATGAAAATTCGTGAAGATGTCTCA
ACAGGTCAACAACTTCAATTTGCCATGCGCGCAACTAACGTTTTCCCATCAATGGCAATACAAATGGTCGCTATTGGTGA
AGAATCCGGTGCGCTCGATTCAATGTTAGAAAAAGTTGCAACACACTACGAAAATGAAGTTGATAATGCCGTAGATGGCT
TAACAGCAATGATGGAGCCATTAATTATGGCTGTTCTTGGTGTACTAGTTGGTGGTCTTGTAATTGCCATGTACCTTCCA
ATTTTCCAAATGGGTTCTGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.255

100

0.873
  pilC Acinetobacter baylyi ADP1

81.863

100

0.819
  pilC Pseudomonas stutzeri DSM 10701

60.988

99.265

0.605
  pilC Legionella pneumophila strain ERS1305867

53.904

97.304

0.525
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

41.814

97.304

0.407
  pilC Thermus thermophilus HB27

35.971

100

0.368