Detailed information NTG0679589

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MZO21_RS15125
• Genome accession: NZ_CP096120
• Coordinates: 2259858..2260724 (+)
• Length: 288 a.a.
• NCBI ID: WP_282441558.1
• Uniprot ID: -
• Organism: Acinetobacter portensis strain JNE5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2254858..2265724

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MZO21_RS11230 (MZO21_11225)	secG	2255477..2255806 (-)	330	WP_154772010.1	preprotein translocase subunit SecG	-
MZO21_RS11235 (MZO21_11230)	tpiA	2255820..2256611 (-)	792	WP_154772009.1	triose-phosphate isomerase	-
MZO21_RS11240 (MZO21_11235)	pilB	2256890..2258602 (+)	1713	WP_154772008.1	type IV-A pilus assembly ATPase PilB	Machinery gene
MZO21_RS11245 (MZO21_11240)	pilC	2258632..2259858 (+)	1227	WP_248103368.1	type II secretion system F family protein	Machinery gene
MZO21_RS15125	pilD	2259858..2260724 (+)	867	WP_282441558.1	A24 family peptidase	Machinery gene
MZO21_RS11260 (MZO21_11255)	coaE	2260727..2261332 (+)	606	WP_248103370.1	dephospho-CoA kinase	-
MZO21_RS11265 (MZO21_11260)	-	2261329..2262249 (-)	921	WP_248103375.1	DMT family transporter	-
MZO21_RS11270 (MZO21_11265)	rlmB	2262269..2263018 (-)	750	WP_248103377.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
MZO21_RS11275 (MZO21_11270)	-	2263151..2263474 (-)	324	WP_154772002.1	pyrimidine/purine nucleoside phosphorylase	-
MZO21_RS11280 (MZO21_11275)	recN	2264007..2265668 (+)	1662	WP_248103380.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32213.64 Da
• Isoelectric Point: 7.8590

>NTDB_id=679589 MZO21_RS15125 WP_282441558.1 2259858..2260724(+) (pilD) [Acinetobacter portensis strain JNE5]
MHELISYFILNPTALYIAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQFLLHPEQPIIDESKITLSKPDSTCPKCQSP
IRWYQNIPVISWLALKGKCGSCQNPISIRYPLIEVLTAVASLIVVAVFGPTLQMLFALVFTWVLITLTFIDFDTQLLPDR
YTLTLAALGLGINSFALYTSPTSAIWGYIIGFLCLWIVYYIFKLVTGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSL
VGAIIGIILMKVRKENLPFAFGPYIAIAGWIAFLWGEKIMQLYLGQLG

Nucleotide

• Length: 867 bp

>NTDB_id=679589 MZO21_RS15125 WP_282441558.1 2259858..2260724(+) (pilD) [Acinetobacter portensis strain JNE5]
ATGCACGAATTAATCTCTTATTTTATTTTAAATCCAACTGCACTTTATATTGCAGTTGGAGTTTTTAGTTTATGCATTGG
TAGTTTTTTAAATGTTGTTATTTATAGAACGCCTAAAATGATGGAACAAGAATGGCGTACAGATTGCCAATTCTTATTAC
ATCCTGAACAACCAATTATTGATGAATCAAAAATTACATTAAGTAAGCCTGATTCAACCTGCCCAAAATGCCAATCCCCT
ATTCGTTGGTATCAGAATATTCCTGTAATTAGTTGGCTTGCTTTAAAAGGAAAATGTGGGAGCTGCCAAAACCCAATTAG
CATTCGCTACCCACTTATTGAAGTGTTAACTGCTGTTGCATCACTTATAGTTGTTGCAGTATTTGGCCCTACACTTCAAA
TGTTATTTGCTTTGGTATTTACCTGGGTTTTAATTACCCTCACATTTATTGATTTTGACACCCAACTTTTACCAGATCGA
TATACTCTTACCTTAGCTGCACTTGGCTTAGGTATAAACAGCTTTGCACTTTATACATCTCCCACTTCAGCAATTTGGGG
CTATATCATTGGCTTCTTATGTCTTTGGATTGTGTACTACATCTTTAAATTAGTCACAGGCAAAGAAGGTATGGGTTATG
GCGATTTTAAATTACTTGCAGCTTTAGGTGCGTGGATGGGACCAATGATGCTCCCACTCATCGTACTACTTTCATCGTTG
GTTGGTGCTATTATTGGTATTATTCTAATGAAAGTTCGCAAGGAAAATCTTCCTTTTGCTTTTGGCCCTTATATTGCGAT
AGCAGGTTGGATTGCCTTTCTTTGGGGTGAAAAAATCATGCAATTATATTTAGGTCAGCTAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	78.596	98.958	0.778
pilD	Acinetobacter nosocomialis M2	78.246	98.958	0.774
pilD	Vibrio cholerae strain A1552	52.857	97.222	0.514
pilD	Vibrio campbellii strain DS40M4	49.477	99.653	0.493
pilD	Neisseria gonorrhoeae MS11	48	95.486	0.458