Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MYA84_RS01435 Genome accession   NZ_CP095872
Coordinates   304456..306621 (+) Length   721 a.a.
NCBI ID   WP_184103409.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299456..311621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS01415 (MYA84_01415) pilM 301500..302558 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  MYA84_RS01420 (MYA84_01420) comN 302558..303199 (+) 642 WP_048881760.1 PilN domain-containing protein Machinery gene
  MYA84_RS01425 (MYA84_01425) comO 303193..303912 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  MYA84_RS01430 (MYA84_01430) pilP 303912..304439 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  MYA84_RS01435 (MYA84_01435) pilQ 304456..306621 (+) 2166 WP_184103409.1 type IV pilus secretin PilQ family protein Machinery gene
  MYA84_RS01440 (MYA84_01440) aroK 306658..307194 (+) 537 WP_071319795.1 shikimate kinase AroK -
  MYA84_RS01445 (MYA84_01445) aroB 307222..308301 (+) 1080 WP_071319796.1 3-dehydroquinate synthase -
  MYA84_RS01450 (MYA84_01450) - 308315..309157 (+) 843 WP_071319797.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78338.61 Da        Isoelectric Point: 5.1450

>NTDB_id=678941 MYA84_RS01435 WP_184103409.1 304456..306621(+) (pilQ) [Acinetobacter schindleri strain H4-3-C1]
MNKSFKEFIFGDANTMNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSSIAVATKEASSVDVTSDAQRARLTVNLADAGAFTTRVEGNTFILKINSTNPVIPVQPVVQQNTQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGSKVIVRALGSKIPTHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSD
SYEYMAYQTDNKLTISLKRPEEKNPLRPKAAQHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKAEEEEAKALAQSVKLAPIQTEYMQLSYAKAADIEKLITQNKGASSA
GSNTGSTSVDDKESLLSSRGSISIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEIGVKWGI
LSQGITNNNNLLVGGSDTTLWDLRDPQESDLGGYTYDIQRPDNLNVDLGVANPAGRIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVLTADKQAAKVSSGTQIPYQSSEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMLLNITSDTPGNPTPT
GQLTINKNQISTNVLVDNGETVVLGGIFEQETRNGQTKVPFLGDIPYLGRLFRKDTKSDNKRELLIFVTPRIVNDSVSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=678941 MYA84_RS01435 WP_184103409.1 304456..306621(+) (pilQ) [Acinetobacter schindleri strain H4-3-C1]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGCTAATACAATGAATCATGTGTTTCGTCAGTTTTCAATGGGGGC
AGTTGCCATTGCTGTTATGCAGGCGGCAAGTGCACAGGTTTCGATGACCAATGTGGTACCAATGCAGATTCCAGGACAAG
GTACTGAAATTCGCGTGATGTTTAATGGCTTGCCGCCTCAACCACAAGCTTATCAATTAGAATCACCATCACGTCTGATT
CTGGATTTTGATAAAGCACAGCAGAATTTAAAACAAAGCAGTATTGCTGTTGCAACGAAAGAAGCAAGTTCTGTAGATGT
GACTTCAGATGCCCAGCGTGCACGTTTAACTGTGAATCTGGCTGATGCGGGTGCATTTACCACGCGTGTTGAAGGCAATA
CCTTTATTCTAAAAATCAATTCAACCAATCCAGTTATCCCTGTACAGCCAGTCGTACAACAAAATACTCAAGGCATTACC
AATATTGGGTTCCAGCGCGGGGCGAAAGGTGAAGGTCAGGTCGTGATTGATCTAGCGAGTGGTAATACACCGGTTGATGT
GCAACAGCAAGGCAGCAAAGTTATTGTACGAGCATTAGGCTCCAAGATTCCTACTCATTTAACGCGTCGTCTGAATGTGA
ATGATTTTGCTACACCTGTTTCGACAGTAGATGCAGTCAACCAGAATGGCTCTGGAGTGATTACCATTCAAACTTCAGAT
AGCTATGAATACATGGCTTATCAAACCGATAATAAACTGACAATTAGTTTAAAACGCCCAGAAGAGAAAAATCCATTACG
TCCAAAAGCTGCTCAACATTATACAGGTAAGAAAATTTCTTTAGATTTTCAGGATATTGAAGTTCGCCGAGTATTACAGC
TACTAGCAGATTTCACTGACATTAATATGGTTGCAGCAGACAGCGTACAAGGCAATATTACTTTGCGTCTTAAGGAAGTG
CCTTGGGATCAGGCTTTAGATATCGTTTTAAAGACCAAGAATTTGGATAAGCGCCGTAATGGGAATGTAATCTGGATCGC
GCCTGTATCTGAGCTCATTAAAGCTGAAGAGGAAGAAGCTAAAGCACTTGCACAAAGTGTAAAGCTGGCTCCTATTCAGA
CAGAGTATATGCAACTCAGTTATGCCAAAGCAGCTGATATTGAAAAGCTCATCACGCAGAATAAAGGGGCCTCAAGTGCC
GGTTCTAATACAGGCAGTACAAGTGTAGATGATAAGGAGAGTCTACTGAGTTCACGTGGTTCTATTTCTATTGATGCACG
TACCAATACTTTAATTGTAAATGATACTCAGCCTTTTATCGATAAAATCCGCAATATGGTGGATCTGCTTGATGTACAGG
TAAAGCAGGTCATGGTTGAAGCACGTATTGTGCGTGCATCGACTGAATTCACCAAAGAAATCGGGGTGAAATGGGGAATT
CTTTCTCAGGGCATTACTAATAATAATAATCTATTAGTGGGTGGAAGTGACACTACACTTTGGGATTTGCGTGATCCTCA
AGAAAGTGATTTAGGTGGATATACCTATGATATTCAACGCCCAGATAATTTGAATGTTGACTTGGGTGTTGCAAACCCTG
CTGGTCGAATTGCTTTTGGCTTGATTAGCTTATCTGACTTTATGTTAGATCTGGAGCTTTCTGCTTTACAAGCAGATGGT
TATGGTGAAGTGATCTCAACACCTAAAGTTTTAACAGCAGATAAGCAGGCGGCTAAAGTTTCATCAGGTACACAAATTCC
GTATCAATCTTCAGAAGGGGGTGGTGCAAATGCAGTTTCAACTACTGAATTTATTGATGCAACCCTCAGCTTAGATGTAA
CTCCTAGTATTACACCTGACGGTAAAGTTCAGATGCTGCTCAATATTACCAGTGATACTCCTGGAAACCCGACTCCAACG
GGTCAATTAACGATTAATAAAAATCAAATTAGCACTAATGTGCTGGTTGATAATGGAGAAACGGTAGTTTTGGGGGGGAT
TTTTGAGCAAGAAACACGGAATGGACAAACTAAAGTACCTTTCTTGGGAGATATCCCATATTTAGGCCGTTTATTCCGTA
AGGATACTAAGTCTGATAATAAGCGTGAGCTCCTGATTTTTGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAAT
CATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-135)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-456)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Secretin and TonB N terminus short domain (STN)

(306-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.211

100

0.75
  pilQ Acinetobacter baumannii strain A118

74.074

100

0.749
  comQ Acinetobacter baylyi ADP1

69.832

99.307

0.693
  pilQ Pseudomonas aeruginosa PAK

41.954

96.533

0.405
  pilQ Legionella pneumophila strain Lp02

37.429

98.197

0.368
  pilQ Legionella pneumophila strain ERS1305867

37.822

96.81

0.366