Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   MYA84_RS01420 Genome accession   NZ_CP095872
Coordinates   302558..303199 (+) Length   213 a.a.
NCBI ID   WP_048881760.1    Uniprot ID   A0A0J8SRM9
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 297558..308199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS01405 (MYA84_01405) - 297926..298729 (+) 804 WP_048881758.1 putative RNA methyltransferase -
  MYA84_RS01410 (MYA84_01410) ponA 298802..301330 (-) 2529 WP_184103406.1 penicillin-binding protein PBP1a -
  MYA84_RS01415 (MYA84_01415) pilM 301500..302558 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  MYA84_RS01420 (MYA84_01420) comN 302558..303199 (+) 642 WP_048881760.1 PilN domain-containing protein Machinery gene
  MYA84_RS01425 (MYA84_01425) comO 303193..303912 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  MYA84_RS01430 (MYA84_01430) pilP 303912..304439 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  MYA84_RS01435 (MYA84_01435) pilQ 304456..306621 (+) 2166 WP_184103409.1 type IV pilus secretin PilQ family protein Machinery gene
  MYA84_RS01440 (MYA84_01440) aroK 306658..307194 (+) 537 WP_071319795.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23758.98 Da        Isoelectric Point: 4.7690

>NTDB_id=678938 MYA84_RS01420 WP_048881760.1 302558..303199(+) (comN) [Acinetobacter schindleri strain H4-3-C1]
MAKINLLPWRDELRIKRNNEFVAYCIGALLLGVTAAGGSWFYYDQKLQDQEQANQLIISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSDMYITKFDRVGDKFTIEGKAASPNTVAELLRNLEASTWYRNAFMNAFLV
AEENKDKAPSSVIPRVEESYGTFTVTVDLDQIAQPVLSEQQPQAAAAAGGATS

Nucleotide


Download         Length: 642 bp        

>NTDB_id=678938 MYA84_RS01420 WP_048881760.1 302558..303199(+) (comN) [Acinetobacter schindleri strain H4-3-C1]
ATGGCAAAAATTAACTTACTTCCTTGGCGTGATGAGCTCAGGATAAAAAGAAATAACGAATTTGTCGCATATTGCATCGG
GGCCTTGTTGCTAGGGGTAACAGCAGCTGGAGGAAGCTGGTTCTACTATGATCAAAAATTACAGGATCAAGAACAAGCCA
ACCAACTCATCATCAGTACCAATCAGAATCTGGATGTACAGCTAAAATCTCTGGAAGGTTTACAGGAACAGCGTAATGCG
ATTGTGGAACGCATGAAACTGATTCAAGGTTTACAAACCCAGCGTCCAATTGCCGTACATCTTATTGACGAGATTGTACG
TGTAACCCCAAGTGATATGTATATCACCAAGTTTGACCGTGTCGGTGATAAGTTCACCATTGAAGGTAAAGCAGCAAGTC
CAAATACGGTTGCAGAATTATTGCGTAATCTCGAAGCTTCTACCTGGTACCGTAATGCTTTCATGAATGCATTCCTGGTG
GCGGAAGAGAATAAGGACAAGGCGCCAAGCTCTGTTATTCCACGTGTTGAAGAATCTTATGGCACATTTACAGTGACAGT
GGATCTGGACCAGATTGCTCAACCGGTGCTTTCAGAACAACAGCCGCAAGCAGCTGCAGCAGCAGGAGGGGCGACATCAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J8SRM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

69.378

98.122

0.681
  pilN Acinetobacter baumannii D1279779

66.509

99.531

0.662