Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   MYA84_RS01425 Genome accession   NZ_CP095872
Coordinates   303193..303912 (+) Length   239 a.a.
NCBI ID   WP_026056744.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298193..308912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS01410 (MYA84_01410) ponA 298802..301330 (-) 2529 WP_184103406.1 penicillin-binding protein PBP1a -
  MYA84_RS01415 (MYA84_01415) pilM 301500..302558 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  MYA84_RS01420 (MYA84_01420) comN 302558..303199 (+) 642 WP_048881760.1 PilN domain-containing protein Machinery gene
  MYA84_RS01425 (MYA84_01425) comO 303193..303912 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  MYA84_RS01430 (MYA84_01430) pilP 303912..304439 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  MYA84_RS01435 (MYA84_01435) pilQ 304456..306621 (+) 2166 WP_184103409.1 type IV pilus secretin PilQ family protein Machinery gene
  MYA84_RS01440 (MYA84_01440) aroK 306658..307194 (+) 537 WP_071319795.1 shikimate kinase AroK -
  MYA84_RS01445 (MYA84_01445) aroB 307222..308301 (+) 1080 WP_071319796.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26948.52 Da        Isoelectric Point: 4.6463

>NTDB_id=678939 MYA84_RS01425 WP_026056744.1 303193..303912(+) (comO) [Acinetobacter schindleri strain H4-3-C1]
MMSEQFDELGQEAVVVPKNKMTVEKFFQQFNTLDPNNYGSWPLAVKITCWVFIVFLVLMLAYFGLIRGKIESITQANAQE
QNLLNEFREKDSKLRNLQQYQQQLQDMEASFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQP
ISIEATGDYHAFGSFVSGIAGLSRIVTLHDFTITGTENKEKKTDIPVVDYTLKAKTYRYVGSANSASADTTAANSQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=678939 MYA84_RS01425 WP_026056744.1 303193..303912(+) (comO) [Acinetobacter schindleri strain H4-3-C1]
ATCATGAGCGAACAATTTGATGAATTAGGTCAGGAAGCTGTTGTTGTACCAAAAAATAAAATGACGGTAGAAAAGTTTTT
TCAGCAATTTAATACCCTCGATCCAAATAACTATGGTAGCTGGCCACTGGCTGTAAAGATTACCTGCTGGGTATTTATTG
TTTTCCTGGTTTTGATGCTGGCTTATTTCGGTCTGATTCGAGGCAAGATTGAATCAATTACTCAGGCCAATGCACAAGAA
CAGAATCTGTTAAATGAATTTCGTGAGAAAGATTCCAAACTGCGTAATTTGCAACAATACCAACAGCAACTTCAGGATAT
GGAAGCAAGCTTTAACCAGCAGCTTGAACAGTTACCAAAGGAAACTGAAATCCCAGGCCTGGTTGAAGATATTAATTTGA
GTGGTGTCAATGCCGGACTGAAGTTTAAGAATATCCGTCTTGAACCTGAAGTAAAGCAAGAGTTCTTTATTGAACAGCCA
ATTTCTATTGAAGCAACGGGTGATTATCATGCCTTTGGTTCATTTGTCAGCGGTATTGCAGGATTGTCTCGTATCGTGAC
GCTACACGATTTTACGATTACGGGTACTGAAAATAAAGAGAAGAAAACAGATATCCCGGTTGTAGATTATACCTTGAAGG
CAAAAACCTATCGTTATGTCGGTAGTGCGAACTCAGCATCGGCAGATACAACAGCTGCGAATAGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.362

98.326

0.682
  pilO Acinetobacter baumannii D1279779

68.584

94.561

0.649