Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   MYA84_RS01430 Genome accession   NZ_CP095872
Coordinates   303912..304439 (+) Length   175 a.a.
NCBI ID   WP_004810006.1    Uniprot ID   A0A1P8PN98
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 298912..309439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS01415 (MYA84_01415) pilM 301500..302558 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  MYA84_RS01420 (MYA84_01420) comN 302558..303199 (+) 642 WP_048881760.1 PilN domain-containing protein Machinery gene
  MYA84_RS01425 (MYA84_01425) comO 303193..303912 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  MYA84_RS01430 (MYA84_01430) pilP 303912..304439 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  MYA84_RS01435 (MYA84_01435) pilQ 304456..306621 (+) 2166 WP_184103409.1 type IV pilus secretin PilQ family protein Machinery gene
  MYA84_RS01440 (MYA84_01440) aroK 306658..307194 (+) 537 WP_071319795.1 shikimate kinase AroK -
  MYA84_RS01445 (MYA84_01445) aroB 307222..308301 (+) 1080 WP_071319796.1 3-dehydroquinate synthase -
  MYA84_RS01450 (MYA84_01450) - 308315..309157 (+) 843 WP_071319797.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19156.31 Da        Isoelectric Point: 7.2763

>NTDB_id=678940 MYA84_RS01430 WP_004810006.1 303912..304439(+) (pilP) [Acinetobacter schindleri strain H4-3-C1]
MKMIKIASALTAGLILAGCESRIDVVNQEMANIRNQPALPIEPAPDFAPVETFSYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLTMKGSLKNQAGQIMALINTPDGEIERVQRGSYMGLNHGRVIHITPTQIDLIEIIPDGRDG
YVERPRSMVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=678940 MYA84_RS01430 WP_004810006.1 303912..304439(+) (pilP) [Acinetobacter schindleri strain H4-3-C1]
ATGAAGATGATCAAAATTGCTTCAGCACTTACTGCCGGATTAATCCTGGCAGGTTGTGAATCACGTATTGATGTGGTCAA
TCAGGAAATGGCCAATATCCGCAATCAACCCGCATTGCCCATTGAGCCAGCACCCGATTTTGCTCCGGTTGAAACTTTTA
GTTATGCAGCACATCAGCTAAAAAGTCCTTTCTTGCCAAGTTCATTGGCAGCAGAACTGAAGATTATGGCAGGGAAACGG
GTTTATCCAAACCTATCACGTCAATTGCAACCTTTAGAAAGTTATCCGCTTGAAACTTTGACCATGAAAGGAAGTCTCAA
AAACCAGGCTGGACAGATTATGGCTTTAATTAATACGCCAGATGGGGAAATTGAACGTGTACAGCGTGGCAGTTATATGG
GACTTAATCATGGTCGGGTGATCCATATCACACCGACACAAATTGATCTGATCGAGATTATTCCAGATGGACGCGATGGC
TATGTGGAACGCCCTCGCAGTATGGTCCTGATTGGGCCTGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8PN98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

73.143

100

0.731
  comL Acinetobacter baylyi ADP1

71.598

96.571

0.691