Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MYF86_RS02350 Genome accession   NZ_CP095841
Coordinates   493950..495191 (+) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain AV040     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 488950..500191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF86_RS02325 (MYF86_02325) ampD 489187..489762 (-) 576 WP_247823576.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MYF86_RS02330 (MYF86_02330) - 489893..490363 (+) 471 WP_040068932.1 retropepsin-like aspartic protease -
  MYF86_RS02335 (MYF86_02335) nadC 490367..491242 (+) 876 WP_019444781.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MYF86_RS02340 (MYF86_02340) - 491558..492001 (+) 444 WP_247823577.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MYF86_RS02345 (MYF86_02345) pilB 492004..493710 (+) 1707 WP_139463613.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  MYF86_RS02350 (MYF86_02350) pilC 493950..495191 (+) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  MYF86_RS02355 (MYF86_02355) pilD 495253..496125 (+) 873 WP_247823578.1 A24 family peptidase Machinery gene
  MYF86_RS02360 (MYF86_02360) coaE 496139..496753 (+) 615 WP_247823579.1 dephospho-CoA kinase -
  MYF86_RS02365 (MYF86_02365) zapD 496791..497513 (+) 723 WP_005355104.1 cell division protein ZapD -
  MYF86_RS02370 (MYF86_02370) yacG 497523..497717 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  MYF86_RS02375 (MYF86_02375) mutT 497795..498199 (-) 405 WP_019444787.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=678684 MYF86_RS02350 WP_005336136.1 493950..495191(+) (pilC) [Aeromonas veronii strain AV040]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=678684 MYF86_RS02350 WP_005336136.1 493950..495191(+) (pilC) [Aeromonas veronii strain AV040]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGTATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAATCCCAAGGGCTCTTCTCCAAGGGAGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCCCGT
CAGATCACCACAATGCTCTCCGCTGGCGTACCACTGGTGCAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGTACCCCCATGTCGGAAGCGCTGCGCCGCCATCCCC
TCTACTTTGACGATCTCTATTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGGGCACTGGAGACCATCTACGACCGTATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTTACCTCCATCCTGCTGCTATTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACTGCC
CTTGGCATCTTCCTCTATGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCCATGGCCCGCTTTGCCCGCACCCTGTCAACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCGGCTGGGGCCTCCGGCAACTATGTCTATCGCACCGCAGTCATGGCCATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTTGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATTCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368