Detailed information NTG0678685

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MYF86_RS02355
• Genome accession: NZ_CP095841
• Coordinates: 495253..496125 (+)
• Length: 290 a.a.
• NCBI ID: WP_247823578.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain AV040
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 490253..501125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MYF86_RS02335 (MYF86_02335)	nadC	490367..491242 (+)	876	WP_019444781.1	carboxylating nicotinate-nucleotide diphosphorylase	-
MYF86_RS02340 (MYF86_02340)	-	491558..492001 (+)	444	WP_247823577.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
MYF86_RS02345 (MYF86_02345)	pilB	492004..493710 (+)	1707	WP_139463613.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
MYF86_RS02350 (MYF86_02350)	pilC	493950..495191 (+)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
MYF86_RS02355 (MYF86_02355)	pilD	495253..496125 (+)	873	WP_247823578.1	A24 family peptidase	Machinery gene
MYF86_RS02360 (MYF86_02360)	coaE	496139..496753 (+)	615	WP_247823579.1	dephospho-CoA kinase	-
MYF86_RS02365 (MYF86_02365)	zapD	496791..497513 (+)	723	WP_005355104.1	cell division protein ZapD	-
MYF86_RS02370 (MYF86_02370)	yacG	497523..497717 (+)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
MYF86_RS02375 (MYF86_02375)	mutT	497795..498199 (-)	405	WP_019444787.1	8-oxo-dGTP diphosphatase MutT	-
MYF86_RS02380 (MYF86_02380)	secA	498274..500994 (-)	2721	WP_164535949.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32131.45 Da
• Isoelectric Point: 6.8233

>NTDB_id=678685 MYF86_RS02355 WP_247823578.1 495253..496125(+) (pilD) [Aeromonas veronii strain AV040]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATAPERYNLMVPRSACPHCGHA
IPALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGSVPLADAVIGAMAGYLVLWSLYWAFKLLTCKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=678685 MYF86_RS02355 WP_247823578.1 495253..496125(+) (pilD) [Aeromonas veronii strain AV040]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCGCAGCTACTTCG
CCCCCGATGAGGAGGCTACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCCCTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCGCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGCA
CGCTGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCCCTGCTGTGGGGTGGGCTGCTGTTCAATCTGGCAGGTGGCTCCGTCCCCTTGGCTGATGCAGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTACTAACCTGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTACCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCACAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.49	98.621	0.597
pilD	Vibrio campbellii strain DS40M4	56.098	98.966	0.555
pilD	Acinetobacter baumannii D1279779	53.047	96.207	0.51
pilD	Acinetobacter nosocomialis M2	53.047	96.207	0.51
pilD	Neisseria gonorrhoeae MS11	48.352	94.138	0.455