Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L2Y96_RS06580 Genome accession   NZ_CP095741
Coordinates   1471447..1472712 (-) Length   421 a.a.
NCBI ID   WP_247334293.1    Uniprot ID   -
Organism   Luteibacter aegosomaticola strain 335     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466447..1477712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y96_RS06555 (L2Y96_06555) msrA 1466559..1467233 (-) 675 WP_247334283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  L2Y96_RS06560 (L2Y96_06560) - 1467374..1468621 (+) 1248 WP_247334285.1 HD-GYP domain-containing protein -
  L2Y96_RS06565 (L2Y96_06565) - 1468618..1469865 (+) 1248 WP_247334287.1 GGDEF domain-containing phosphodiesterase -
  L2Y96_RS06570 (L2Y96_06570) coaE 1469899..1470501 (-) 603 WP_247334289.1 dephospho-CoA kinase -
  L2Y96_RS06575 (L2Y96_06575) pilD 1470498..1471367 (-) 870 WP_247334291.1 A24 family peptidase Machinery gene
  L2Y96_RS06580 (L2Y96_06580) pilC 1471447..1472712 (-) 1266 WP_247334293.1 type II secretion system F family protein Machinery gene
  L2Y96_RS06585 (L2Y96_06585) pilB 1472856..1474583 (-) 1728 WP_247334303.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L2Y96_RS06590 (L2Y96_06590) - 1474733..1475587 (+) 855 WP_247334304.1 glycosyltransferase family 2 protein -
  L2Y96_RS06595 (L2Y96_06595) - 1475584..1476549 (+) 966 WP_247334306.1 glycosyltransferase -
  L2Y96_RS06600 (L2Y96_06600) - 1476709..1477332 (+) 624 WP_247334308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46022.05 Da        Isoelectric Point: 10.0501

>NTDB_id=677975 L2Y96_RS06580 WP_247334293.1 1471447..1472712(-) (pilC) [Luteibacter aegosomaticola strain 335]
MAIATATKNARAAGAARAAVNQLTTYDWTALDKRGKRMKGEMQAKNASLVKAELRRQGMNPQQVRERAKPLFGSSGKSVK
PRDVAIFSRQIATMMASGVPMVQAFDIIANGQKNPKFKDMLVNVKTSIEGGAALHEALGQYPVEFDELYRNLVHAGESAG
VLDTVLDTVATYKERMESIKAKIKKALFYPIMVLVVALLVSMILLLFVVPVFQQTFAEAKAELPAPTQFVVAASKFMQSY
WWVVVGSIVGSVVALIYFKKRSQKFAHFLDRFSLKIPVIGDLLHKSAIARFARTLGVTFHAGVPLVEALDAVSGATGSVV
YGEAVKQMRDDISVGHQLQLSMRQVNLFPNMVVQMTAIGEESGSLDHMLFKVAEFYEEEVNTAVDTLSSLLEPFIMVILG
VLVGGMVISLYLPIFKLAGTV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=677975 L2Y96_RS06580 WP_247334293.1 1471447..1472712(-) (pilC) [Luteibacter aegosomaticola strain 335]
ATGGCTATCGCCACCGCTACGAAAAACGCGCGCGCCGCTGGTGCTGCGCGTGCCGCAGTCAATCAGCTGACGACGTACGA
CTGGACCGCTCTCGACAAGCGCGGCAAGCGCATGAAGGGCGAGATGCAGGCGAAGAACGCCTCGCTCGTAAAGGCAGAAC
TGCGCCGTCAGGGCATGAACCCGCAGCAGGTGCGTGAGCGCGCCAAGCCGCTGTTTGGCTCGAGCGGCAAGTCCGTCAAG
CCTCGCGATGTCGCCATCTTCAGCCGCCAGATCGCCACCATGATGGCCTCGGGCGTACCGATGGTGCAGGCCTTCGACAT
CATCGCGAACGGCCAGAAGAACCCCAAATTCAAGGACATGCTGGTCAATGTGAAGACCAGCATCGAAGGCGGCGCCGCGC
TCCACGAAGCTCTGGGCCAGTACCCCGTGGAGTTCGATGAGCTGTACCGCAACCTGGTCCATGCGGGCGAATCGGCCGGT
GTGCTCGATACCGTGCTCGATACCGTCGCGACCTATAAGGAGCGCATGGAGAGCATCAAGGCCAAGATCAAGAAGGCCTT
GTTCTATCCGATCATGGTTCTCGTGGTCGCCCTGCTTGTCTCAATGATCTTGCTGCTCTTCGTGGTCCCGGTGTTCCAGC
AGACCTTCGCGGAAGCCAAGGCCGAGCTCCCGGCGCCCACGCAGTTCGTCGTGGCGGCATCGAAGTTCATGCAGTCGTAC
TGGTGGGTGGTCGTCGGCTCCATCGTCGGCTCGGTGGTCGCGCTGATCTACTTCAAGAAACGCTCGCAAAAGTTCGCCCA
CTTCCTCGATCGCTTCTCGCTGAAAATCCCGGTCATCGGCGACCTGCTGCACAAGTCGGCCATCGCCCGCTTCGCGCGTA
CCCTCGGCGTTACGTTCCACGCCGGTGTGCCGCTGGTGGAAGCACTGGATGCCGTGTCGGGTGCCACTGGTAGCGTAGTG
TACGGCGAGGCGGTGAAGCAGATGCGCGACGATATCTCCGTCGGTCACCAGCTCCAGCTGTCCATGCGCCAGGTGAACCT
GTTCCCGAACATGGTGGTGCAGATGACCGCCATCGGCGAAGAATCCGGCTCGCTCGACCACATGCTGTTCAAGGTCGCTG
AGTTCTACGAGGAAGAGGTGAACACCGCCGTGGACACGCTGAGCAGCCTGCTCGAGCCGTTCATCATGGTGATCCTTGGC
GTCCTCGTCGGCGGCATGGTCATCTCGCTGTACCTGCCGATCTTCAAGCTGGCCGGCACGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.383

94.774

0.506
  pilC Pseudomonas stutzeri DSM 10701

52.261

94.537

0.494
  pilC Acinetobacter baumannii D1279779

50

95.012

0.475
  pilC Acinetobacter baylyi ADP1

48.75

95.012

0.463
  pilG Neisseria meningitidis 44/76-A

41.192

91.686

0.378
  pilG Neisseria gonorrhoeae MS11

41.192

91.686

0.378
  pilC Vibrio campbellii strain DS40M4

39.295

94.299

0.371
  pilC Thermus thermophilus HB27

37.871

95.962

0.363
  pilC Vibrio cholerae strain A1552

38.481

93.824

0.361