Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG906_RS21825 Genome accession   NZ_CP109500
Coordinates   4909816..4910841 (+) Length   341 a.a.
NCBI ID   WP_329445084.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01426     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4904816..4915841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG906_RS21805 (OG906_21795) - 4905218..4906561 (-) 1344 WP_329445078.1 GH1 family beta-glucosidase -
  OG906_RS21810 (OG906_21800) - 4906576..4907400 (-) 825 WP_329445081.1 carbohydrate ABC transporter permease -
  OG906_RS21815 (OG906_21805) - 4907397..4908377 (-) 981 WP_329445082.1 sugar ABC transporter permease -
  OG906_RS21820 (OG906_21810) - 4908385..4909701 (-) 1317 WP_329445083.1 ABC transporter substrate-binding protein -
  OG906_RS21825 (OG906_21815) cytR 4909816..4910841 (+) 1026 WP_329445084.1 LacI family DNA-binding transcriptional regulator Regulator
  OG906_RS21835 (OG906_21825) orn 4911061..4911663 (-) 603 WP_329445086.1 oligoribonuclease -
  OG906_RS21840 (OG906_21830) - 4911776..4912948 (-) 1173 WP_267799505.1 helix-turn-helix domain-containing protein -
  OG906_RS21845 (OG906_21835) - 4913325..4913645 (-) 321 WP_329445088.1 hypothetical protein -
  OG906_RS21850 (OG906_21840) - 4914113..4914643 (+) 531 WP_053674694.1 universal stress protein -
  OG906_RS21855 (OG906_21845) - 4914743..4915312 (+) 570 WP_329445091.1 acetate uptake transporter -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36140.98 Da        Isoelectric Point: 5.9469

>NTDB_id=677975 OG906_RS21825 WP_329445084.1 4909816..4910841(+) (cytR) [Streptomyces sp. NBC_01426]
MNGHGRSGGRPTLEEVAVRAGVGRGTVSRVINGSSKVSEHTRVAVEAAVAELGYVPNRAARALAANRTDAIALVIPEPEA
RFFAEPYFSDVVRGVGATLAETDVQLVLTLAGSERERRRLAQYLSGHRVDGVLLVSVHAGDPLPELLAELGIPAVISGRR
SADETLPSVDSDNLAGAAEAVRHLLARGRRAIATVTGPLDVYGAQCRLDGYRQALLAAGHPVDESLIAVADFTEEGGRRA
VRELLDRRPDLDAVFAASDVMAAGARRELRAAGRRIPGDVALVGFDDSVVARHMDPPLTSVRQPIEEMGRTMARVLLERI
AGEAGETAVVLPTELVVRESS

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=677975 OG906_RS21825 WP_329445084.1 4909816..4910841(+) (cytR) [Streptomyces sp. NBC_01426]
ATGAACGGGCACGGGCGCAGCGGGGGACGGCCGACGCTGGAAGAGGTCGCGGTGCGGGCCGGCGTCGGACGCGGCACGGT
CTCCCGGGTGATCAACGGATCCTCCAAGGTCAGCGAGCACACCCGGGTCGCTGTCGAGGCCGCCGTGGCCGAGCTCGGCT
ACGTCCCCAACCGGGCCGCCCGGGCCCTCGCCGCGAACCGCACCGACGCCATCGCCCTCGTCATCCCCGAGCCCGAGGCC
CGCTTCTTCGCCGAGCCGTACTTCTCCGACGTGGTGCGCGGAGTCGGCGCCACCCTCGCCGAGACCGACGTCCAGCTGGT
GCTCACCCTCGCCGGCAGCGAGCGGGAGCGTCGCCGACTCGCCCAGTACCTGTCCGGGCACCGCGTCGACGGGGTGCTCC
TGGTCTCCGTGCACGCCGGGGACCCGCTCCCGGAGCTGCTCGCCGAACTCGGCATCCCCGCGGTGATCAGCGGGCGCCGC
TCCGCCGACGAGACGCTCCCCAGCGTGGACTCCGACAACCTCGCGGGAGCCGCCGAGGCCGTACGCCACCTCCTCGCCCG
CGGCCGGCGCGCGATCGCCACCGTCACCGGACCCCTCGACGTGTACGGCGCCCAGTGCCGCCTCGACGGCTACCGCCAGG
CCCTCCTGGCCGCCGGGCACCCGGTCGACGAGTCACTGATCGCGGTCGCGGACTTCACCGAGGAGGGCGGCCGCCGGGCC
GTGCGCGAGCTGCTGGACCGCCGACCCGACCTCGACGCCGTCTTCGCCGCCTCCGACGTCATGGCGGCGGGCGCCCGCCG
CGAGCTGCGGGCCGCCGGCCGCCGCATCCCGGGGGACGTGGCCCTGGTCGGCTTCGACGACTCGGTGGTGGCCCGCCACA
TGGACCCGCCGCTGACCAGCGTGCGCCAGCCGATCGAGGAGATGGGCCGCACCATGGCACGGGTCCTGTTGGAGCGGATC
GCGGGCGAGGCGGGGGAGACGGCGGTCGTCCTGCCGACGGAGCTGGTGGTCCGGGAATCCTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(12-57)

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.278

99.12

0.37