Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   L2Y96_RS06575 Genome accession   NZ_CP095741
Coordinates   1470498..1471367 (-) Length   289 a.a.
NCBI ID   WP_247334291.1    Uniprot ID   -
Organism   Luteibacter aegosomaticola strain 335     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1465498..1476367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y96_RS06555 (L2Y96_06555) msrA 1466559..1467233 (-) 675 WP_247334283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  L2Y96_RS06560 (L2Y96_06560) - 1467374..1468621 (+) 1248 WP_247334285.1 HD-GYP domain-containing protein -
  L2Y96_RS06565 (L2Y96_06565) - 1468618..1469865 (+) 1248 WP_247334287.1 GGDEF domain-containing phosphodiesterase -
  L2Y96_RS06570 (L2Y96_06570) coaE 1469899..1470501 (-) 603 WP_247334289.1 dephospho-CoA kinase -
  L2Y96_RS06575 (L2Y96_06575) pilD 1470498..1471367 (-) 870 WP_247334291.1 A24 family peptidase Machinery gene
  L2Y96_RS06580 (L2Y96_06580) pilC 1471447..1472712 (-) 1266 WP_247334293.1 type II secretion system F family protein Machinery gene
  L2Y96_RS06585 (L2Y96_06585) pilB 1472856..1474583 (-) 1728 WP_247334303.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L2Y96_RS06590 (L2Y96_06590) - 1474733..1475587 (+) 855 WP_247334304.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31460.40 Da        Isoelectric Point: 8.1529

>NTDB_id=677974 L2Y96_RS06575 WP_247334291.1 1470498..1471367(-) (pilD) [Luteibacter aegosomaticola strain 335]
MPDLPLALWVAFAAALGLLVGSFLNVVILRVPARMQADWRRQAREVLELPEVDEPRPPGVVVEGSHCPKCKHPLAAHDNI
PVIGWLLLKGRCRYCREPISKQYPLVEFLSGVASAAVVWHFGPTPGALAGLVFTWFLIALSGIDARTQLLPDELNYPLLW
IGLGLTLIPGWQPLPVTPSSAILAALIGYLSLWSVYQAFRLLTGKEGMGHGDFKLLAALGAWMGPIALLPIIMLSSLIGA
LVGGSLMLFFKHQRDVPIPFGPYIAAAGWVWFLWGDGILGAYLHLTGLR

Nucleotide


Download         Length: 870 bp        

>NTDB_id=677974 L2Y96_RS06575 WP_247334291.1 1470498..1471367(-) (pilD) [Luteibacter aegosomaticola strain 335]
ATGCCTGATTTGCCCCTCGCCCTCTGGGTCGCCTTTGCGGCCGCCCTCGGCCTCCTCGTCGGCAGCTTCCTCAACGTCGT
GATCCTGCGCGTACCGGCACGCATGCAGGCCGACTGGCGCCGCCAGGCGCGCGAAGTGCTCGAACTGCCCGAGGTGGATG
AGCCGCGTCCGCCGGGCGTGGTCGTGGAAGGTTCGCATTGCCCTAAGTGCAAGCATCCGCTCGCGGCCCACGACAACATC
CCGGTCATCGGCTGGCTGCTCCTCAAGGGGCGCTGCCGTTACTGTCGGGAACCGATTTCGAAGCAGTACCCGCTGGTGGA
GTTCCTCTCCGGTGTGGCCAGCGCGGCGGTGGTCTGGCACTTCGGCCCCACGCCCGGCGCGCTTGCAGGGCTGGTGTTCA
CCTGGTTCCTCATCGCACTCTCCGGCATCGACGCGCGCACGCAACTGCTGCCCGATGAACTGAACTATCCGCTGCTGTGG
ATCGGCCTGGGCCTCACCCTGATCCCGGGCTGGCAGCCGCTGCCTGTCACACCCTCCTCCGCCATCCTGGCTGCGCTGAT
CGGCTACCTGAGCCTGTGGAGTGTCTACCAGGCGTTCCGCCTGCTCACCGGCAAGGAAGGCATGGGCCATGGCGATTTCA
AACTGCTGGCCGCGCTGGGTGCCTGGATGGGCCCGATCGCACTGCTCCCGATCATCATGCTTTCCTCGCTGATCGGTGCG
CTCGTGGGCGGTTCGCTGATGCTGTTCTTCAAGCACCAACGTGACGTGCCCATCCCGTTCGGTCCCTACATCGCCGCGGC
GGGCTGGGTGTGGTTCCTGTGGGGCGACGGCATCCTCGGCGCCTACCTGCACCTGACCGGGCTGCGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(16-121)

Type IV leader peptidase family (Peptidase_A24)

(131-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

50.179

96.54

0.484
  pilD Acinetobacter nosocomialis M2

49.462

96.54

0.478
  pilD Neisseria gonorrhoeae MS11

48.148

93.426

0.45
  pilD Vibrio campbellii strain DS40M4

46.931

95.848

0.45
  pilD Vibrio cholerae strain A1552

47.08

94.81

0.446