Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MRO13_RS02395 Genome accession   NZ_CP095311
Coordinates   501240..502466 (-) Length   408 a.a.
NCBI ID   WP_154170154.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 496240..507466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS02375 (MRO13_02375) yacG 498573..498770 (-) 198 WP_040903818.1 DNA gyrase inhibitor YacG -
  MRO13_RS02380 (MRO13_02380) zapD 498812..499552 (-) 741 WP_004394266.1 cell division protein ZapD -
  MRO13_RS02385 (MRO13_02385) coaE 499584..500192 (-) 609 WP_158138885.1 dephospho-CoA kinase -
  MRO13_RS02390 (MRO13_02390) pilD 500198..501064 (-) 867 WP_158138884.1 A24 family peptidase Machinery gene
  MRO13_RS02395 (MRO13_02395) pilC 501240..502466 (-) 1227 WP_154170154.1 type II secretion system F family protein Machinery gene
  MRO13_RS02400 (MRO13_02400) pilB 502485..504173 (-) 1689 WP_350940065.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MRO13_RS02405 (MRO13_02405) pilA 504185..504640 (-) 456 WP_350940067.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MRO13_RS02410 (MRO13_02410) nadC 504923..505813 (-) 891 WP_350940069.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MRO13_RS02415 (MRO13_02415) ampD 505922..506467 (+) 546 WP_154170162.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  MRO13_RS02420 (MRO13_02420) fldB 506464..506982 (-) 519 WP_350940071.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45061.50 Da        Isoelectric Point: 10.2098

>NTDB_id=676279 MRO13_RS02395 WP_154170154.1 501240..502466(-) (pilC) [Vibrio metschnikovii strain 20CO01TI02]
MTLSKAQELKNYRWKGINSSGKKVSGQFLAISELEVRDKLKDQHVQIQKIKKSSLSLITRLTHRATNKEITLLTRQLSTM
LATGVPIVQALKLVADSHQKAEMKSIITQISKGVAAGTPISKAMRTASSLFDPLYVDLVQTGEQSGNLAEVFERLATYRE
KTEQLRAKVIKALIYPAMVMLVALGVSYLMLTMIIPEFELMFQGFGAELPWFTQQVLKLSHLVQAYSLVFVLLCIAIVFG
FKLIRKKSFQFRLKTSRLALTIPIVGGILCKASIAKFSRTLATSFAAGIPILDSLKTTAKTAGNLHFETAIQQVYRDTAA
GMPMYIAMRNTGAFPELVLQMVMIGEESGKLDDMLNKVATIYEFDVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=676279 MRO13_RS02395 WP_154170154.1 501240..502466(-) (pilC) [Vibrio metschnikovii strain 20CO01TI02]
ATGACGCTATCTAAAGCACAAGAACTGAAAAATTATCGCTGGAAAGGCATCAATAGCTCTGGCAAAAAAGTGTCAGGGCA
ATTTTTAGCGATCAGCGAATTGGAAGTGCGCGATAAACTCAAAGATCAACATGTGCAGATTCAAAAGATCAAAAAAAGCA
GCCTCTCTTTGATCACTCGTCTCACTCATCGCGCCACAAACAAAGAGATTACCCTGCTGACTCGCCAACTCTCGACCATG
CTCGCGACGGGGGTCCCCATTGTTCAAGCCTTAAAGTTAGTCGCTGATAGTCATCAAAAAGCAGAAATGAAATCGATCAT
CACTCAAATAAGTAAAGGCGTAGCAGCAGGGACGCCGATCTCAAAAGCAATGCGTACCGCCAGTAGCCTGTTTGACCCTC
TTTACGTTGATTTGGTACAAACGGGTGAACAATCGGGTAACTTGGCGGAAGTTTTTGAGCGCCTTGCCACCTATCGAGAG
AAAACCGAACAACTGCGCGCCAAAGTGATCAAAGCGTTAATCTATCCAGCGATGGTGATGTTGGTTGCGCTTGGCGTCTC
TTACTTAATGCTCACCATGATTATTCCTGAATTTGAGCTTATGTTTCAAGGTTTTGGTGCCGAGTTACCTTGGTTTACTC
AACAAGTACTTAAACTGTCGCATCTGGTTCAAGCCTACAGCTTAGTCTTTGTACTGCTCTGCATTGCCATCGTATTCGGT
TTTAAACTTATCCGTAAAAAATCGTTCCAATTCCGTTTAAAAACCAGCCGCTTAGCACTCACTATACCGATTGTTGGTGG
CATACTCTGCAAAGCGTCGATCGCCAAATTTAGCCGAACTCTCGCCACCAGCTTTGCGGCTGGGATCCCGATTCTTGATA
GCCTAAAAACGACCGCGAAAACCGCAGGTAATCTTCATTTTGAAACGGCTATTCAACAAGTCTACCGAGATACTGCGGCA
GGCATGCCAATGTATATCGCGATGCGCAATACCGGCGCTTTCCCAGAATTGGTTCTACAAATGGTTATGATTGGCGAGGA
GTCTGGTAAGCTCGATGATATGCTGAATAAAGTAGCAACGATTTATGAATTCGACGTTGATAACACGGTTGATAATTTAG
GTAAAATCCTTGAACCGTTAATTATTGTCTTTCTTGGCACAGTGGTTGGTGGGCTGGTTGTGGCAATGTATTTACCTATC
TTTAACTTAATGAGTGTATTGGGGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

81.373

100

0.814
  pilC Vibrio campbellii strain DS40M4

69.975

98.775

0.691
  pilC Pseudomonas stutzeri DSM 10701

41.687

98.775

0.412
  pilC Acinetobacter baumannii D1279779

40.686

100

0.407
  pilG Neisseria gonorrhoeae MS11

40.541

99.755

0.404
  pilC Acinetobacter baylyi ADP1

39.951

100

0.4
  pilG Neisseria meningitidis 44/76-A

40.049

99.755

0.4
  pilC Legionella pneumophila strain ERS1305867

40.351

97.794

0.395