Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MRO13_RS02390 Genome accession   NZ_CP095311
Coordinates   500198..501064 (-) Length   288 a.a.
NCBI ID   WP_158138884.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 20CO01TI02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495198..506064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRO13_RS02370 (MRO13_02370) parC 496203..498476 (+) 2274 WP_350940062.1 DNA topoisomerase IV subunit A -
  MRO13_RS02375 (MRO13_02375) yacG 498573..498770 (-) 198 WP_040903818.1 DNA gyrase inhibitor YacG -
  MRO13_RS02380 (MRO13_02380) zapD 498812..499552 (-) 741 WP_004394266.1 cell division protein ZapD -
  MRO13_RS02385 (MRO13_02385) coaE 499584..500192 (-) 609 WP_158138885.1 dephospho-CoA kinase -
  MRO13_RS02390 (MRO13_02390) pilD 500198..501064 (-) 867 WP_158138884.1 A24 family peptidase Machinery gene
  MRO13_RS02395 (MRO13_02395) pilC 501240..502466 (-) 1227 WP_154170154.1 type II secretion system F family protein Machinery gene
  MRO13_RS02400 (MRO13_02400) pilB 502485..504173 (-) 1689 WP_350940065.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MRO13_RS02405 (MRO13_02405) pilA 504185..504640 (-) 456 WP_350940067.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MRO13_RS02410 (MRO13_02410) nadC 504923..505813 (-) 891 WP_350940069.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31889.16 Da        Isoelectric Point: 7.8853

>NTDB_id=676278 MRO13_RS02390 WP_158138884.1 500198..501064(-) (pilD) [Vibrio metschnikovii strain 20CO01TI02]
MDIFYYIPWLFPALATLLGLIIGSFLNVVIYRLPTMMQREWRQECADAFPDYGITPPDGKLTLSTPRSTCPKCHTPLRIR
DNIPLISWLCLQGKCAHCSAPISARYPAIELLTAVSSLIIALHFGFSPYSVALLLFTYVLIAATFIDLDSMLLPDQLTLP
LLWAGISLALLNISPLSLNDAVIGAIAGYLCLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQLLPLIVLLSSLVGL
VFGLIQLRLQKQGINKAFPFGPYLAIAGWLAMLWGDKLIAWYLHSLVG

Nucleotide


Download         Length: 867 bp        

>NTDB_id=676278 MRO13_RS02390 WP_158138884.1 500198..501064(-) (pilD) [Vibrio metschnikovii strain 20CO01TI02]
ATGGACATTTTTTACTATATACCTTGGCTATTTCCCGCCTTAGCAACGCTATTGGGGTTAATCATTGGTAGTTTTCTGAA
TGTGGTGATTTACCGCTTACCAACAATGATGCAACGAGAATGGCGTCAAGAATGTGCCGATGCTTTTCCTGACTATGGCA
TCACACCACCTGATGGCAAGCTCACGCTCAGTACACCTCGTTCAACCTGCCCTAAATGCCATACGCCTTTGCGCATAAGG
GATAATATTCCGCTTATCAGTTGGCTCTGTTTGCAAGGCAAATGCGCGCACTGTTCAGCACCGATCAGCGCTCGCTATCC
GGCGATTGAGCTATTAACTGCCGTGAGCAGTTTGATCATTGCTCTGCACTTTGGCTTTAGCCCTTATAGTGTGGCACTGC
TGCTATTTACTTATGTGTTAATTGCCGCCACCTTCATTGATTTGGATAGCATGTTGCTGCCAGACCAATTGACTCTGCCT
TTACTGTGGGCAGGGATCAGCCTAGCACTTTTGAATATTAGCCCACTCTCACTGAATGACGCCGTGATTGGAGCGATAGC
AGGGTATCTTTGCTTATGGTCTATTTATTGGCTATTTAAGCTACTGACCGGTAAAGAAGGCATGGGCTATGGTGACTTTA
AGTTGCTTGCCGCGCTCGGTGCTTGGTTAGGTTGGCAATTATTACCGTTAATCGTATTACTCTCTTCACTGGTCGGTTTG
GTGTTTGGATTGATTCAATTGCGTTTGCAAAAACAAGGCATTAATAAAGCTTTCCCGTTTGGTCCTTACTTGGCGATTGC
TGGTTGGCTGGCGATGTTGTGGGGCGATAAACTGATCGCTTGGTATCTACATTCATTAGTAGGATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

76.736

100

0.767
  pilD Vibrio campbellii strain DS40M4

71.875

100

0.719
  pilD Acinetobacter nosocomialis M2

57.037

93.75

0.535
  pilD Acinetobacter baumannii D1279779

55.556

93.75

0.521
  pilD Neisseria gonorrhoeae MS11

45.105

99.306

0.448