Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MUU73_RS04955 Genome accession   NZ_CP095184
Coordinates   1036279..1037535 (+) Length   418 a.a.
NCBI ID   WP_245125217.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain F12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1031279..1042535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU73_RS04935 (MUU73_04935) - 1031686..1032660 (+) 975 WP_245125206.1 glycosyltransferase family 2 protein -
  MUU73_RS04940 (MUU73_04940) - 1032657..1033265 (+) 609 WP_245125209.1 methyltransferase domain-containing protein -
  MUU73_RS04945 (MUU73_04945) - 1033262..1034164 (+) 903 WP_245125212.1 lysylphosphatidylglycerol synthase domain-containing protein -
  MUU73_RS04950 (MUU73_04950) pilB 1034315..1036057 (+) 1743 WP_245125214.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MUU73_RS04955 (MUU73_04955) pilC 1036279..1037535 (+) 1257 WP_245125217.1 type II secretion system F family protein Machinery gene
  MUU73_RS04960 (MUU73_04960) pilD 1037545..1038408 (+) 864 WP_245125220.1 A24 family peptidase Machinery gene
  MUU73_RS04965 (MUU73_04965) coaE 1038442..1039059 (+) 618 WP_245125223.1 dephospho-CoA kinase -
  MUU73_RS04970 (MUU73_04970) - 1039759..1040184 (-) 426 WP_245125225.1 transposase -
  MUU73_RS04975 (MUU73_04975) - 1040562..1041512 (-) 951 WP_245125228.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45925.16 Da        Isoelectric Point: 10.2070

>NTDB_id=675981 MUU73_RS04955 WP_245125217.1 1036279..1037535(+) (pilC) [Pseudoxanthomonas mexicana strain F12]
MAVTRSAAKNTPAPVRENPLNLFVWEGTDKRGIKMKGEQSSKNANFLRAELRKQGITPTVVKVKPKPLFGSAGKPVTPKE
IAFFSRQLATMMKSGVPIVTSLEIIEGGQKNVRMKKLIEQIRYDIESGSSLSEAISKHPVQFDELYRNLVRAGESAGVLE
TVLDTIASYKENIEALKGKIKKALFYPAVVIAVALLVSAILLIFVVPQFENVFKQFGADLPAFTKIIVAASRFMVSNWYI
VFGAVFAAIFAFMFFKKRSLAFQHFLDRATLKLPVIGQIMHNSAIARFARTLAVTFKAGVPLVEALDTVAGATGNTVYEK
AVHRVRDDVSVGYPLNMSMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLIEPFIMIFIGGVV
GAMVVGMYLPIFKLAATM

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=675981 MUU73_RS04955 WP_245125217.1 1036279..1037535(+) (pilC) [Pseudoxanthomonas mexicana strain F12]
ATGGCCGTTACCCGTTCCGCCGCCAAAAACACGCCCGCGCCCGTCCGCGAGAACCCGCTGAACCTGTTCGTCTGGGAAGG
CACCGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGTCGTCCAAGAACGCAAACTTCCTGCGCGCGGAGCTGCGCAAGC
AGGGCATCACTCCGACCGTGGTCAAGGTGAAGCCCAAGCCGTTGTTCGGCTCGGCGGGCAAGCCGGTGACGCCGAAGGAG
ATCGCCTTCTTCAGCCGCCAGCTGGCGACGATGATGAAGTCCGGCGTGCCCATCGTGACTTCGCTTGAAATCATCGAGGG
CGGGCAGAAGAACGTCCGCATGAAGAAGCTGATCGAGCAGATCCGCTACGACATCGAGAGCGGCTCATCGCTGTCCGAGG
CGATCAGCAAGCACCCGGTTCAGTTCGACGAGCTGTACCGCAATCTGGTCCGCGCGGGTGAGAGTGCGGGCGTGCTGGAG
ACGGTGCTGGACACCATCGCCAGCTACAAGGAAAACATCGAGGCCCTCAAGGGCAAGATCAAGAAGGCGCTGTTCTACCC
GGCGGTGGTGATCGCGGTCGCCCTGCTGGTCAGTGCCATCCTGCTGATCTTCGTGGTGCCGCAATTCGAGAATGTATTCA
AACAGTTCGGCGCCGATCTGCCCGCTTTCACCAAGATCATTGTCGCCGCCTCACGCTTCATGGTGTCCAACTGGTACATC
GTGTTCGGCGCCGTGTTCGCAGCCATCTTCGCCTTCATGTTCTTCAAGAAGCGATCCTTGGCGTTCCAGCACTTCCTTGA
TCGGGCGACACTGAAGCTTCCGGTGATCGGCCAGATCATGCACAACTCGGCCATTGCCCGCTTTGCGAGAACACTGGCGG
TAACCTTCAAGGCCGGCGTGCCGCTGGTGGAAGCGCTGGATACCGTGGCCGGCGCCACCGGCAACACGGTGTACGAAAAG
GCCGTGCATCGCGTACGAGATGACGTGTCGGTGGGTTACCCGCTGAACATGTCGATGAAGCAGGTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACGGCCATCGGCGAGGAAGCCGGCGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTACG
AGCAGGAGGTGAACAACGCGGTGGATGCGTTGTCCAGCCTGATCGAGCCCTTCATCATGATTTTCATCGGCGGCGTGGTT
GGCGCCATGGTGGTCGGCATGTACCTGCCCATCTTCAAGCTCGCGGCGACGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.412

97.608

0.531
  pilC Pseudomonas stutzeri DSM 10701

51.263

94.737

0.486
  pilC Acinetobacter baumannii D1279779

50.127

94.498

0.474
  pilC Acinetobacter baylyi ADP1

49.747

94.737

0.471
  pilG Neisseria gonorrhoeae MS11

43.291

94.498

0.409
  pilG Neisseria meningitidis 44/76-A

43.291

94.498

0.409
  pilC Vibrio cholerae strain A1552

40

95.694

0.383
  pilC Vibrio campbellii strain DS40M4

38.142

97.847

0.373
  pilC Thermus thermophilus HB27

37.717

96.411

0.364