Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   MUU73_RS04960 Genome accession   NZ_CP095184
Coordinates   1037545..1038408 (+) Length   287 a.a.
NCBI ID   WP_245125220.1    Uniprot ID   -
Organism   Pseudoxanthomonas mexicana strain F12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1032545..1043408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUU73_RS04940 (MUU73_04940) - 1032657..1033265 (+) 609 WP_245125209.1 methyltransferase domain-containing protein -
  MUU73_RS04945 (MUU73_04945) - 1033262..1034164 (+) 903 WP_245125212.1 lysylphosphatidylglycerol synthase domain-containing protein -
  MUU73_RS04950 (MUU73_04950) pilB 1034315..1036057 (+) 1743 WP_245125214.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MUU73_RS04955 (MUU73_04955) pilC 1036279..1037535 (+) 1257 WP_245125217.1 type II secretion system F family protein Machinery gene
  MUU73_RS04960 (MUU73_04960) pilD 1037545..1038408 (+) 864 WP_245125220.1 A24 family peptidase Machinery gene
  MUU73_RS04965 (MUU73_04965) coaE 1038442..1039059 (+) 618 WP_245125223.1 dephospho-CoA kinase -
  MUU73_RS04970 (MUU73_04970) - 1039759..1040184 (-) 426 WP_245125225.1 transposase -
  MUU73_RS04975 (MUU73_04975) - 1040562..1041512 (-) 951 WP_245125228.1 Nudix family hydrolase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31935.86 Da        Isoelectric Point: 8.5960

>NTDB_id=675982 MUU73_RS04960 WP_245125220.1 1037545..1038408(+) (pilD) [Pseudoxanthomonas mexicana strain F12]
MAFLDQHPELGYPVVAGLGLLVGSFLNVVILRLPRRLEWEWKRDAREVLEEPEIYDPPPPGIVVERSHCPHCKTPLSWYE
NIPLFSWLVLRGKCRHCKTPISPQYPLVELLTALLAMASVWRFGFGWQGFGAVLFSCYLVALSGIDLRTRLLPDQLTLPL
MWLGLIGSLDNLYMPAKPALLGAIAGYVSLWLVWWLFKQVTGKEGMGRGDFKLLAAIGAWVGLNGVLPTLLLSSVVGAVI
GSVWLATQGRDRATPIPFGPYLAIAGWIVFFWGPQIIDAYLRFAGLK

Nucleotide


Download         Length: 864 bp        

>NTDB_id=675982 MUU73_RS04960 WP_245125220.1 1037545..1038408(+) (pilD) [Pseudoxanthomonas mexicana strain F12]
ATGGCATTCCTGGATCAACACCCCGAACTGGGGTACCCGGTGGTGGCAGGCCTGGGCCTGCTGGTGGGCAGCTTCCTCAA
CGTGGTCATCCTGCGGCTGCCGCGGCGGCTGGAGTGGGAGTGGAAGCGCGACGCGCGCGAGGTGCTGGAGGAGCCGGAGA
TCTACGATCCCCCGCCGCCCGGCATCGTGGTGGAGCGCTCGCACTGCCCCCACTGCAAGACGCCGCTGTCGTGGTACGAG
AACATTCCGCTGTTCAGCTGGCTGGTGCTGCGTGGCAAGTGCCGCCACTGCAAGACCCCCATCTCGCCGCAGTATCCACT
GGTCGAACTGCTGACCGCGCTGCTGGCGATGGCCTCGGTCTGGCGCTTCGGCTTCGGCTGGCAGGGGTTCGGTGCGGTCC
TCTTCAGCTGCTACCTGGTGGCGCTGAGCGGCATCGACCTGCGCACGCGCCTGCTGCCCGACCAGCTGACGCTGCCGCTG
ATGTGGTTGGGCCTGATCGGCAGCCTGGACAACCTGTACATGCCGGCCAAGCCGGCGCTGCTGGGCGCGATCGCCGGCTA
TGTCTCGCTGTGGCTGGTGTGGTGGCTGTTCAAGCAGGTCACCGGCAAGGAAGGCATGGGCCGGGGCGATTTCAAGCTGC
TGGCGGCCATCGGCGCCTGGGTGGGGCTCAACGGCGTGCTGCCGACGCTGCTGTTGTCCTCGGTGGTCGGTGCGGTGATC
GGTTCGGTGTGGCTGGCCACGCAGGGCCGCGACCGTGCCACGCCGATTCCGTTCGGCCCGTACCTGGCCATCGCCGGCTG
GATCGTGTTCTTCTGGGGCCCGCAGATCATCGATGCCTACCTGCGTTTCGCCGGGCTGAAATAG

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(135-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

51.273

95.819

0.491
  pilD Vibrio campbellii strain DS40M4

47.887

98.955

0.474
  pilD Acinetobacter nosocomialis M2

47.163

98.258

0.463
  pilD Acinetobacter baumannii D1279779

46.454

98.258

0.456
  pilD Neisseria gonorrhoeae MS11

45.018

94.425

0.425