Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   MP619_RS00795 Genome accession   NZ_CP095081
Coordinates   134107..134433 (+) Length   108 a.a.
NCBI ID   WP_111714771.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain WJ001     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 129107..139433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP619_RS00780 (MP619_00775) - 131751..132116 (+) 366 WP_129555183.1 DUF1033 family protein -
  MP619_RS00785 (MP619_00780) comYA 132197..133138 (+) 942 WP_129555184.1 competence type IV pilus ATPase ComGA Machinery gene
  MP619_RS00790 (MP619_00785) comYB 133074..134105 (+) 1032 WP_129556365.1 competence type IV pilus assembly protein ComGB Machinery gene
  MP619_RS00795 (MP619_00790) comYC 134107..134433 (+) 327 WP_111714771.1 competence type IV pilus major pilin ComGC Machinery gene
  MP619_RS00800 (MP619_00795) - 134463..135923 (-) 1461 WP_155783027.1 recombinase family protein -
  MP619_RS00805 (MP619_00800) - 136200..136655 (-) 456 WP_155778381.1 Ltp family lipoprotein -
  MP619_RS00810 (MP619_00805) - 136704..137465 (-) 762 WP_268227792.1 S24 family peptidase -
  MP619_RS00815 (MP619_00810) - 137627..137830 (+) 204 WP_155778382.1 helix-turn-helix transcriptional regulator -
  MP619_RS00820 (MP619_00815) - 137993..138253 (-) 261 WP_155778383.1 hypothetical protein -
  MP619_RS00825 (MP619_00820) - 138377..138547 (+) 171 WP_268227793.1 hypothetical protein -
  MP619_RS00830 (MP619_00825) - 138526..138672 (+) 147 WP_196772223.1 hypothetical protein -
  MP619_RS00835 (MP619_00830) - 138715..139050 (+) 336 WP_155783026.1 transcriptional regulator -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12345.34 Da        Isoelectric Point: 9.6248

>NTDB_id=675074 MP619_RS00795 WP_111714771.1 134107..134433(+) (comYC) [Streptococcus dysgalactiae strain WJ001]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLSQLKT
DGSITDKQVKAYTDYYEKHTNEKSSLKP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=675074 MP619_RS00795 WP_111714771.1 134107..134433(+) (comYC) [Streptococcus dysgalactiae strain WJ001]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTGCTGGTGATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCAAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTACGAATTATCGCAAGGATCAAAACCAAGTTTAAGTCAATTAAAGACT
GATGGCAGTATTACAGATAAGCAGGTAAAAGCTTACACAGACTATTACGAAAAACATACCAATGAAAAGTCCAGTCTTAA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

58.416

93.519

0.546
  comGC Lactococcus lactis subsp. cremoris KW2

53.271

99.074

0.528
  comGC/cglC Streptococcus mitis SK321

56.566

91.667

0.519
  comGC/cglC Streptococcus mitis NCTC 12261

55.556

91.667

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae D39

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae Rx1

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae R6

54.545

91.667

0.5
  comYC Streptococcus mutans UA140

56.383

87.037

0.491
  comYC Streptococcus mutans UA159

56.383

87.037

0.491
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417