NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OH787_RS25420	Genome accession	NZ_CP109377
Coordinates	5676869..5677486 (+)	Length	205 a.a.
NCBI ID	WP_030008567.1	Uniprot ID	A0ABQ3TIE9
Organism	Streptomyces sp. NBC_01547
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5671869..5682486

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OH787_RS25390 (OH787_25340)	-	5673216..5673671 (+)	456	WP_202201567.1	HD domain-containing protein	-
OH787_RS25395 (OH787_25345)	-	5673847..5674041 (+)	195	WP_030008564.1	membrane protein	-
OH787_RS25400 (OH787_25350)	-	5674044..5674646 (+)	603	WP_252309253.1	hypothetical protein	-
OH787_RS25415 (OH787_25365)	tig	5675204..5676592 (+)	1389	WP_202201569.1	trigger factor	-
OH787_RS25420 (OH787_25370)	clpP	5676869..5677486 (+)	618	WP_030008567.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OH787_RS25425 (OH787_25375)	clpP	5677542..5678210 (+)	669	WP_272934852.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OH787_RS25430 (OH787_25380)	clpX	5678364..5679650 (+)	1287	WP_202201570.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OH787_RS25435 (OH787_25385)	-	5679720..5680652 (-)	933	WP_202201571.1	hypothetical protein	-

Sequence

Protein

Download Length: 205 a.a. Molecular weight: 21667.59 Da Isoelectric Point: 4.6667

                                >NTDB_id=675072 OH787_RS25420 WP_030008567.1 5676869..5677486(+) (clpP) [Streptomyces sp. NBC_01547]

MTNLKPYAAGEPSIGGGLGDHVYNRLLGERIIFLGQQVDDDIANKITAQLLLLAAEPEKDIYLYINSPGGSVTAGMAVYD

TMQFIPNDVVTIGMGMAASMGQFLLTGGAKGKRFALPNTDILMHQGSAGIGGTASDIKIQAQYLLRTKQRMAEITAFHSG

QTVEAIIRDGDRDRWFTAEEAKDYGLIDEIISAASNAPGGGGTGA

Nucleotide

Download Length: 618 bp

                                >NTDB_id=675072 OH787_RS25420 WP_030008567.1 5676869..5677486(+) (clpP) [Streptomyces sp. NBC_01547]

GTGACGAATCTGAAGCCTTACGCCGCGGGTGAGCCGTCCATCGGTGGCGGCCTCGGCGACCATGTCTACAACCGGCTGCT

CGGCGAGCGCATCATCTTCCTCGGCCAGCAGGTCGACGACGACATCGCTAACAAGATCACCGCGCAGCTCCTGCTCCTGG

CCGCCGAGCCGGAGAAGGACATCTACCTCTACATCAACAGCCCCGGTGGCTCCGTGACGGCCGGTATGGCCGTCTACGAC

ACCATGCAGTTCATCCCGAACGACGTCGTCACCATCGGCATGGGCATGGCCGCCTCGATGGGGCAGTTCCTGCTCACCGG

TGGCGCCAAGGGCAAGCGCTTCGCCCTGCCGAACACCGACATCCTGATGCACCAGGGCTCCGCCGGCATCGGTGGCACCG

CGTCGGACATCAAGATCCAGGCCCAGTACCTGCTGCGCACCAAGCAGCGCATGGCCGAGATCACCGCGTTCCACTCGGGC

CAGACCGTCGAGGCGATCATCCGCGACGGTGACCGCGACCGCTGGTTCACCGCCGAGGAGGCCAAGGACTACGGCCTCAT

CGACGAGATCATCTCGGCCGCGTCCAACGCGCCGGGCGGCGGCGGCACGGGTGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	53.403	93.171	0.498
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.053	92.683	0.473
clpP	Lactococcus lactis subsp. cremoris KW2	50.532	91.707	0.463
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50	91.707	0.459
clpP	Streptococcus mutans UA159	53.179	84.39	0.449
clpP	Streptococcus pneumoniae R6	50.847	86.341	0.439
clpP	Streptococcus pneumoniae TIGR4	50.847	86.341	0.439
clpP	Streptococcus pneumoniae D39	50.847	86.341	0.439
clpP	Streptococcus pneumoniae Rx1	50.847	86.341	0.439
clpP	Streptococcus pyogenes MGAS315	51.445	84.39	0.434
clpP	Streptococcus pyogenes JRS4	51.445	84.39	0.434
clpP	Streptococcus thermophilus LMG 18311	50.575	84.878	0.429
clpP	Streptococcus thermophilus LMD-9	50.575	84.878	0.429

Detailed information NTG0675072