Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L9B60_RS15995 Genome accession   NZ_CP094975
Coordinates   3486646..3487863 (-) Length   405 a.a.
NCBI ID   WP_249671620.1    Uniprot ID   -
Organism   Pseudomonas abieticivorans strain PIA16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3481646..3492863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L9B60_RS15960 - 3482637..3482810 (-) 174 WP_249671613.1 DUF3094 family protein -
  L9B60_RS15965 - 3482900..3483529 (-) 630 WP_249671614.1 DUF1780 domain-containing protein -
  L9B60_RS15970 - 3483663..3484130 (+) 468 WP_249671615.1 FAD/FMN-containing dehydrogenase -
  L9B60_RS15975 - 3484127..3484813 (+) 687 WP_249671616.1 energy-coupling factor ABC transporter permease -
  L9B60_RS15980 yacG 3484954..3485154 (-) 201 WP_249671617.1 DNA gyrase inhibitor YacG -
  L9B60_RS15985 coaE 3485151..3485774 (-) 624 WP_249671618.1 dephospho-CoA kinase -
  L9B60_RS15990 pilD 3485774..3486643 (-) 870 WP_249671619.1 A24 family peptidase Machinery gene
  L9B60_RS15995 pilC 3486646..3487863 (-) 1218 WP_249671620.1 type II secretion system F family protein Machinery gene
  L9B60_RS16000 pilB 3487867..3489564 (-) 1698 WP_249671621.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L9B60_RS16005 pilA/pilAI 3489791..3490186 (+) 396 WP_249679751.1 pilin Machinery gene
  L9B60_RS16010 - 3490306..3490722 (+) 417 WP_249671622.1 pilin -
  L9B60_RS16020 - 3491051..3491269 (-) 219 WP_249671623.1 hypothetical protein -
  L9B60_RS16025 - 3491626..3491940 (+) 315 WP_249679752.1 HNH endonuclease -
  L9B60_RS16030 - 3491989..3492600 (-) 612 WP_249671624.1 recombinase family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44099.85 Da        Isoelectric Point: 9.8237

>NTDB_id=674660 L9B60_RS15995 WP_249671620.1 3486646..3487863(-) (pilC) [Pseudomonas abieticivorans strain PIA16]
MAVKAAKVSVYAWEGTDRKGTKITGELSGPSLPLIKAQLRKQGINPIKVRKKSTSLFGKGKKIKPLDIALFTRQMATMMR
AGVPLLQSFDIIGEGFENPNMRKLVDDLKQQVAAGNSFASALRQRPQYFDDLYCNLVDAGEQAGALETLLDRVATYKEKT
EALKAKIKKAMTYPAAVLVVAFIVSGILLIKVVPQFESVFKGFGAELPAFTQMVIDLSVVLQEWWYLVLAAIIAAVYAFK
YAHKNNQRFHDAVDRLLLKLPVIGGILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNIVFKTAVNRIKQDVSTGM
QLNFSMRTTGVFPSLAIQMTAIGEESGALDDMLDKVASFYEAEVDNMVDSLTSLMEPLIMVVLGVVVGGLVVAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=674660 L9B60_RS15995 WP_249671620.1 3486646..3487863(-) (pilC) [Pseudomonas abieticivorans strain PIA16]
ATGGCGGTCAAAGCGGCAAAAGTCAGCGTCTATGCCTGGGAAGGCACGGACCGTAAAGGCACCAAGATAACCGGCGAACT
GAGCGGCCCCTCGCTGCCGTTGATCAAGGCACAACTGCGTAAGCAGGGCATCAACCCAATCAAGGTTCGAAAGAAATCCA
CGTCACTGTTCGGCAAAGGTAAAAAGATCAAGCCGCTGGACATTGCACTGTTCACACGCCAGATGGCGACCATGATGCGC
GCAGGCGTACCACTGCTCCAGTCCTTTGACATCATTGGCGAGGGCTTCGAGAACCCAAACATGCGTAAGCTTGTCGACGA
TCTCAAGCAACAAGTCGCTGCCGGTAATAGCTTTGCAAGCGCCCTGCGACAACGACCGCAATACTTTGACGACTTGTACT
GCAACCTAGTCGACGCAGGCGAACAGGCCGGCGCTCTGGAAACACTCCTGGACCGCGTGGCCACCTACAAGGAAAAGACA
GAAGCACTCAAAGCCAAGATCAAAAAGGCCATGACCTATCCAGCAGCGGTGCTGGTGGTTGCCTTTATTGTTTCGGGCAT
TTTGTTGATTAAGGTAGTGCCTCAGTTCGAGTCCGTTTTCAAAGGCTTTGGTGCAGAACTGCCTGCCTTTACGCAGATGG
TAATCGATCTCTCAGTCGTGCTGCAGGAATGGTGGTATCTGGTATTGGCGGCAATCATTGCTGCTGTTTATGCGTTTAAA
TATGCCCATAAAAACAACCAGCGTTTTCATGACGCAGTTGATCGCCTACTGCTCAAACTTCCCGTGATCGGTGGCATTCT
TTACAAATCAGCGGTCGCCCGGTACGCCCGCACACTATCTACAACATTTGCTGCTGGCGTTCCCTTGGTTGAAGCACTGG
ACTCCGTCTCGGGCGCAACAGGAAATATCGTCTTCAAAACAGCCGTCAACCGCATCAAGCAAGATGTATCCACAGGTATG
CAGCTTAATTTCTCCATGCGCACAACTGGCGTTTTTCCCAGCCTGGCCATCCAAATGACAGCCATTGGTGAAGAGTCGGG
CGCCCTGGACGATATGCTCGACAAGGTCGCCAGCTTTTATGAAGCCGAAGTCGATAACATGGTCGACAGCCTAACCAGCC
TAATGGAACCACTGATTATGGTCGTCCTCGGCGTCGTCGTCGGCGGCCTGGTAGTCGCCATGTACCTCCCCATCTTCCAA
CTCGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

77.778

100

0.778
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Acinetobacter baumannii D1279779

58.824

100

0.593
  pilC Legionella pneumophila strain ERS1305867

54.798

97.778

0.536
  pilG Neisseria meningitidis 44/76-A

44.279

99.259

0.44
  pilG Neisseria gonorrhoeae MS11

44.279

99.259

0.44
  pilC Vibrio cholerae strain A1552

44.192

97.778

0.432
  pilC Vibrio campbellii strain DS40M4

41.626

100

0.417
  pilC Thermus thermophilus HB27

38.404

99.012

0.38