Detailed information NTG0674659

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L9B60_RS15990
• Genome accession: NZ_CP094975
• Coordinates: 3485774..3486643 (-)
• Length: 289 a.a.
• NCBI ID: WP_249671619.1
• Uniprot ID: -
• Organism: Pseudomonas abieticivorans strain PIA16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3480774..3491643

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L9B60_RS15955	-	3481257..3482552 (-)	1296	WP_249671612.1	NAD(P)/FAD-dependent oxidoreductase	-
L9B60_RS15960	-	3482637..3482810 (-)	174	WP_249671613.1	DUF3094 family protein	-
L9B60_RS15965	-	3482900..3483529 (-)	630	WP_249671614.1	DUF1780 domain-containing protein	-
L9B60_RS15970	-	3483663..3484130 (+)	468	WP_249671615.1	FAD/FMN-containing dehydrogenase	-
L9B60_RS15975	-	3484127..3484813 (+)	687	WP_249671616.1	energy-coupling factor ABC transporter permease	-
L9B60_RS15980	yacG	3484954..3485154 (-)	201	WP_249671617.1	DNA gyrase inhibitor YacG	-
L9B60_RS15985	coaE	3485151..3485774 (-)	624	WP_249671618.1	dephospho-CoA kinase	-
L9B60_RS15990	pilD	3485774..3486643 (-)	870	WP_249671619.1	A24 family peptidase	Machinery gene
L9B60_RS15995	pilC	3486646..3487863 (-)	1218	WP_249671620.1	type II secretion system F family protein	Machinery gene
L9B60_RS16000	pilB	3487867..3489564 (-)	1698	WP_249671621.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L9B60_RS16005	pilA/pilAI	3489791..3490186 (+)	396	WP_249679751.1	pilin	Machinery gene
L9B60_RS16010	-	3490306..3490722 (+)	417	WP_249671622.1	pilin	-
L9B60_RS16020	-	3491051..3491269 (-)	219	WP_249671623.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31515.59 Da
• Isoelectric Point: 7.7196

>NTDB_id=674659 L9B60_RS15990 WP_249671619.1 3485774..3486643(-) (pilD) [Pseudomonas abieticivorans strain PIA16]
MPLSEYLASSPLAFTLCALILGLVVGSFLNVVIHRLPKMLEADWKTQARDILGLPAEPAGKTYNLLLPHSHCPHCDHKIR
SWENIPVISYLVLGGKCSACKAPISKRYPLVELACGLLSAFVALHFGFGWQAGAFLLLTWGLFAMSMIDADHQLLPDALV
LPLLWLGLIVNAFGLFTSLTDALWGAVAGYLVLWLVFWLFKLVTGKEGMGHGDFKLLAMLGAWGGWQILPLTVLLSSLVG
AILGVIMLRMRNASNSTPIPFGPYLAIAGWIALLWGDQITTSYMHFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=674659 L9B60_RS15990 WP_249671619.1 3485774..3486643(-) (pilD) [Pseudomonas abieticivorans strain PIA16]
ATGCCCCTATCCGAATACCTGGCCAGCTCCCCCCTGGCCTTTACCCTCTGCGCGCTCATCCTGGGCCTTGTCGTCGGCAG
CTTCCTGAACGTGGTCATCCATCGCCTGCCGAAAATGCTCGAAGCCGACTGGAAAACCCAAGCCCGCGACATCCTCGGCC
TGCCCGCCGAACCCGCCGGCAAGACTTACAACCTATTACTCCCCCACTCCCACTGCCCGCACTGCGACCACAAGATCCGC
AGTTGGGAAAACATCCCGGTCATCAGCTACCTCGTCCTGGGCGGCAAGTGTTCGGCCTGCAAGGCGCCGATCAGCAAGCG
CTACCCGCTGGTTGAACTGGCTTGCGGTCTGCTGTCCGCTTTCGTCGCCTTGCACTTCGGTTTCGGCTGGCAAGCCGGCG
CATTCCTGCTGCTGACCTGGGGCCTGTTCGCGATGAGCATGATCGATGCCGACCATCAGTTGCTGCCCGACGCCTTGGTG
TTGCCGCTGCTGTGGCTGGGGCTGATCGTCAATGCGTTCGGCTTGTTCACGTCACTGACCGATGCGCTGTGGGGTGCGGT
GGCGGGCTACCTGGTGTTGTGGCTGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAAGAGGGCATGGGCCATGGCGATT
TCAAGCTGTTGGCCATGCTGGGCGCTTGGGGTGGCTGGCAGATTTTGCCGTTGACGGTACTGTTGTCGTCGCTGGTGGGG
GCCATTCTGGGGGTGATCATGCTGCGCATGCGCAATGCGTCGAACAGCACGCCGATCCCGTTTGGTCCGTATCTGGCCAT
TGCGGGGTGGATCGCATTGCTCTGGGGTGATCAAATAACCACCTCATACATGCATTTCGCTGGTTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.545	95.156	0.519
pilD	Vibrio campbellii strain DS40M4	52.313	97.232	0.509
pilD	Acinetobacter baumannii D1279779	51.957	97.232	0.505
pilD	Acinetobacter nosocomialis M2	51.246	97.232	0.498
pilD	Neisseria gonorrhoeae MS11	47.122	96.194	0.453