Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   MTZ49_RS08455 Genome accession   NZ_CP094972
Coordinates   1766593..1767801 (-) Length   402 a.a.
NCBI ID   WP_264745116.1    Uniprot ID   -
Organism   Entomomonas sp. E2T0     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1761593..1772801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTZ49_RS08430 (MTZ49_08425) rpsO 1762211..1762480 (+) 270 WP_201094453.1 30S ribosomal protein S15 -
  MTZ49_RS08435 (MTZ49_08430) pnp 1762624..1764759 (+) 2136 WP_264745112.1 polyribonucleotide nucleotidyltransferase -
  MTZ49_RS08440 (MTZ49_08435) yacG 1764809..1765027 (-) 219 WP_264745113.1 DNA gyrase inhibitor YacG -
  MTZ49_RS08445 (MTZ49_08440) coaE 1765032..1765634 (-) 603 WP_264745114.1 dephospho-CoA kinase -
  MTZ49_RS08450 (MTZ49_08445) pilD 1765721..1766587 (-) 867 WP_264745115.1 prepilin peptidase Machinery gene
  MTZ49_RS08455 (MTZ49_08450) pilC 1766593..1767801 (-) 1209 WP_264745116.1 type II secretion system F family protein Machinery gene
  MTZ49_RS08460 (MTZ49_08455) pilB 1767982..1769646 (-) 1665 WP_264745117.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MTZ49_RS08465 (MTZ49_08460) - 1769812..1770792 (-) 981 WP_264745118.1 two-component system response regulator -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43783.79 Da        Isoelectric Point: 10.0772

>NTDB_id=674630 MTZ49_RS08455 WP_264745116.1 1766593..1767801(-) (pilC) [Entomomonas sp. E2T0]
MAQVAKTRTYLWKGVDKSGNKLKGELNATDPTVIKAILRKQGITAKQINRKLELGMGGKIKPIDIAIFTRQMATMMKAGV
PMIQALEIIAEGAEKPKIRELLDNIKQEVASGNSFTSSLRKRPLYFDELFCSLIEAGEKSGTLETLLDRVAGYKEKSESL
KKKVKKAMIYPIAILVVAAIVSAILLIKVVPQFAAIFQSFGAELPWLTQQVVDMSEYLQSDGWKVLVAIFVIGFAIKEAY
KRAPAFRDLIDRGLLRIPIVGSIIYNSAVARFTRTLSTTFAAGVPLVEALDSVAGATGNIVYKRAVLKIKQEVSTGRQLN
FAMRGSNVFPALAVQLTAIGEESGSLDSMLGKAANFYEEAVDNIVDSLSALMEPMIMAVLGVIIGTLIIAMYLPIFQMGS
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=674630 MTZ49_RS08455 WP_264745116.1 1766593..1767801(-) (pilC) [Entomomonas sp. E2T0]
ATGGCGCAAGTAGCAAAAACACGTACTTATTTATGGAAAGGTGTAGATAAATCTGGTAACAAACTAAAAGGGGAATTAAA
TGCAACAGACCCTACTGTTATCAAGGCTATTCTCCGTAAACAAGGTATCACTGCTAAACAAATTAATCGTAAACTAGAGC
TTGGTATGGGTGGCAAAATCAAGCCTATTGATATTGCTATTTTTACGCGCCAAATGGCCACTATGATGAAAGCCGGTGTA
CCTATGATTCAAGCTCTTGAGATCATAGCCGAAGGTGCCGAAAAACCTAAAATACGTGAGCTACTGGATAATATTAAACA
AGAAGTAGCTTCTGGTAATAGTTTTACTTCTTCTTTAAGAAAACGTCCATTATATTTTGATGAGCTTTTTTGTAGCCTTA
TTGAGGCTGGTGAAAAGTCAGGTACTTTAGAGACATTATTAGACCGAGTTGCTGGTTATAAGGAAAAAAGTGAGTCACTA
AAGAAAAAAGTAAAAAAAGCAATGATTTATCCTATTGCTATTCTTGTAGTGGCGGCTATCGTTTCTGCCATTCTCTTAAT
CAAAGTAGTACCTCAGTTTGCTGCTATCTTCCAGAGCTTTGGTGCTGAACTACCTTGGCTAACTCAGCAAGTTGTTGATA
TGTCAGAATATTTACAATCTGATGGATGGAAAGTACTTGTTGCGATTTTTGTTATTGGTTTCGCAATTAAAGAAGCCTAT
AAGCGCGCACCGGCTTTCCGAGATCTTATTGATAGAGGATTGCTACGTATACCTATTGTAGGTTCTATTATCTATAACTC
TGCTGTTGCTCGTTTTACTCGTACTTTATCTACTACTTTTGCTGCTGGTGTTCCTCTAGTAGAAGCATTAGACTCAGTAG
CAGGCGCTACGGGAAATATTGTATATAAAAGAGCTGTACTAAAAATCAAGCAAGAAGTTTCTACAGGTAGACAGCTCAAC
TTTGCTATGCGTGGTAGTAATGTATTCCCTGCCTTAGCCGTTCAGTTAACTGCGATTGGTGAAGAATCTGGTTCGTTAGA
TAGTATGCTTGGTAAAGCAGCTAATTTTTATGAAGAAGCGGTAGATAATATTGTTGATAGTTTATCTGCCCTTATGGAAC
CAATGATTATGGCTGTATTAGGGGTTATTATTGGTACATTGATTATTGCTATGTACTTACCAATTTTCCAAATGGGCAGT
GTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.562

100

0.632
  pilC Acinetobacter baylyi ADP1

59.75

99.502

0.595
  pilC Acinetobacter baumannii D1279779

56.533

99.005

0.56
  pilC Legionella pneumophila strain ERS1305867

48.866

98.756

0.483
  pilG Neisseria gonorrhoeae MS11

44.888

99.751

0.448
  pilG Neisseria meningitidis 44/76-A

44.638

99.751

0.445
  pilC Vibrio campbellii strain DS40M4

39.25

99.502

0.391
  pilC Vibrio cholerae strain A1552

37.965

100

0.381
  pilC Thermus thermophilus HB27

37.811

100

0.378